View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21554_low_17 (Length: 227)
Name: NF21554_low_17
Description: NF21554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21554_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 55869629 - 55869823
Alignment:
| Q |
17 |
atcaatagtatggacattaccatggaatgctattaatccaggaggcaatgtccctagatgccacaaactcaggtctgattttatattctgcataaaacat |
116 |
Q |
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| T |
55869629 |
atcaatagtatggacattaccatggaatgctattaatccagggggcaatgtccctagatgccacaaactcaggtctgattttatattctgcataaaacat |
55869728 |
T |
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| Q |
117 |
cacaaaaatagtttaattatgatactatctttctttaatagtaatttactacttccctatctcctgtatggtaaccactgaggattagcacaggt |
211 |
Q |
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| T |
55869729 |
cacaaaaatagtttaattatgatactatctttctttaatagtaatttactacttccctatctcctgtatggtaaccactgaggattagcacaggt |
55869823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 33 - 156
Target Start/End: Complemental strand, 31536856 - 31536731
Alignment:
| Q |
33 |
ttaccatggaatgctattaatccaggaggcaatgtcc----ctagatgccacaaactcaggtctgattttatattctgcataaaacatcacaaaaatagt |
128 |
Q |
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| T |
31536856 |
ttaccatggaatgctattaatccaggaggcaatgtccctagctagatgccacaagctcaggttcgattttgtattctgcataaagcat-accaaaatag- |
31536759 |
T |
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| Q |
129 |
ttaattatgatactatctttctttaata |
156 |
Q |
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| T |
31536758 |
tgcatcatgatactatctttctctaata |
31536731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 34674191 - 34674276
Alignment:
| Q |
27 |
tggacattaccatggaatgctattaatccaggaggcaatgtccctagatgccacaaactcaggtctgattttatattctgcataaa |
112 |
Q |
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| T |
34674191 |
tggacatgaccatgaaatgctatcaatccaggaggtaatgtccctagctgccacaaactcaggtctgatttaatattctgcataaa |
34674276 |
T |
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