View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21554_low_21 (Length: 216)
Name: NF21554_low_21
Description: NF21554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21554_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 41452311 - 41452109
Alignment:
| Q |
1 |
ggtgcacctacatttgtatctgtggttacttttggtacttgtatgctcatagggatcccacttgaatcagggaagattctgtcagcacttgcgacattca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41452311 |
ggtgcacctacatttgtatctgtggttacttttggtacttgtatgctcatagggatcccacttgaatcagggaagattctgtcagcacttgcgacattca |
41452212 |
T |
|
| Q |
101 |
ggattcttcaagagcctatttataatcttccagatgtaatttcaatgatagcacaaactaaagtttctcttgataggatagcgtcgttccttcgtcttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41452211 |
ggattcttcaagagcctatttataatcttccagatgtaatttcaatgatagcacaaactaaagtttctcttgataggatagcgtcgttccttcgtcttga |
41452112 |
T |
|
| Q |
201 |
tga |
203 |
Q |
| |
|
||| |
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|
| T |
41452111 |
tga |
41452109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 41439142 - 41438940
Alignment:
| Q |
1 |
ggtgcacctacatttgtatctgtggttacttttggtacttgtatgctcatagggatcccacttgaatcagggaagattctgtcagcacttgcgacattca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
41439142 |
ggtgcacctacatttgtatctgtggttacttttggtacttgtatgctcgtagggatcccacttgaatcaggaaagattctgtcagcacttgcaacattca |
41439043 |
T |
|
| Q |
101 |
ggattcttcaagagcctatttataatcttccagatgtaatttcaatgatagcacaaactaaagtttctcttgataggatagcgtcgttccttcgtcttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
41439042 |
ggattcttcaagagcctatttataatcttccagatgtaatttcaatgatagcacaaactaaagtttctcttgataggattgcatcgttccttcgtcttga |
41438943 |
T |
|
| Q |
201 |
tga |
203 |
Q |
| |
|
||| |
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|
| T |
41438942 |
tga |
41438940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 2 - 203
Target Start/End: Complemental strand, 14241301 - 14241100
Alignment:
| Q |
2 |
gtgcacctacatttgtatctgtggttacttttggtacttgtatgctcatagggatcccacttgaatcagggaagattctgtcagcacttgcgacattcag |
101 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| ||||||| |
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| T |
14241301 |
gtgcacctacgttcgtatctgtggttacttttggtacttgtatgctcataggggtcccacttgaatcagggaagattttgtcagtacttgcaacattcaa |
14241202 |
T |
|
| Q |
102 |
gattcttcaagagcctatttataatcttccagatgtaatttcaatgatagcacaaactaaagtttctcttgataggatagcgtcgttccttcgtcttgat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
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| T |
14241201 |
gattcttcaagagcctatttataatcttccagatgtaatttcaatgatagcacaaactaaagtttctcttgataggattgcatcgttccttcgccttgat |
14241102 |
T |
|
| Q |
202 |
ga |
203 |
Q |
| |
|
|| |
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|
| T |
14241101 |
ga |
14241100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 60 - 203
Target Start/End: Original strand, 14372115 - 14372258
Alignment:
| Q |
60 |
acttgaatcagggaagattctgtcagcacttgcgacattcaggattcttcaagagcctatttataatcttccagatgtaatttcaatgatagcacaaact |
159 |
Q |
| |
|
|||||| ||||| ||| ||||||| |||||||| ||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14372115 |
acttgagtcaggaaaggttctgtcggcacttgcaacattcaggatgcttcaaaggcctatttatagtcttccagatgtaatttcaatgatagcacaaact |
14372214 |
T |
|
| Q |
160 |
aaagtttctcttgataggatagcgtcgttccttcgtcttgatga |
203 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
14372215 |
aaagtttctcttgataggatcgggtcgttccttcgtcttgatga |
14372258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 14372038 - 14372095
Alignment:
| Q |
14 |
ttgtatctgtggttacttttggtacttgtatgctcatagggatcccacttgaatcagg |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
14372038 |
ttgtatctgtggttacttttggtacttgtacgctcatagggatcccacttgagtcagg |
14372095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 22751018 - 22750841
Alignment:
| Q |
2 |
gtgcacctacatttgtatctgtggttacttttggtacttgtatgctcatagggatcccacttgaatcagggaagattctgtcagcacttgcgacattcag |
101 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||| ||||||| | |||||| |||||||||||||||||||||| | || ||||||| ||||| |
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| T |
22751018 |
gtgcaccagcatttgtgtctgtggttacttttggttcttgtattgttataggggtcccacttgaatcagggaagatcttatcttcacttgcaacatttca |
22750919 |
T |
|
| Q |
102 |
gattcttcaagagcctatttataatcttccagatgtaatttcaatgatagcacaaactaaagtttctcttgataggat |
179 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||||||||| ||||| ||| ||||||||||||||||| |
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| T |
22750918 |
gattctgcaagaacctatttataatcttccagacacaatttcaatgatgtcacaatgtaaggtttctcttgataggat |
22750841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 22727681 - 22727522
Alignment:
| Q |
20 |
ctgtggttacttttggtacttgtatgctcatagggatcccacttgaatcagggaagattctgtcagcacttgcgacattcaggattcttcaagagcctat |
119 |
Q |
| |
|
||||||||||||||||| ||||| | || ||||| || || ||||||||||| |||||| | || || ||||| |||||||| ||||||||| ||||| |
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|
| T |
22727681 |
ctgtggttacttttggtgcttgtgttcttataggcattccgcttgaatcaggaaagattttatctgctcttgcaacattcagaattcttcaaactcctat |
22727582 |
T |
|
| Q |
120 |
ttataatcttccagatgtaatttcaatgatagcacaaactaaagtttctcttgataggat |
179 |
Q |
| |
|
||| |||||| ||| |||||||||||| |||||||| || |||||||| |||||||| |
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|
| T |
22727581 |
ccatagtcttcctgatacaatttcaatgattgcacaaaccaaggtttctctagataggat |
22727522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 22739302 - 22739461
Alignment:
| Q |
20 |
ctgtggttacttttggtacttgtatgctcatagggatcccacttgaatcagggaagattctgtcagcacttgcgacattcaggattcttcaagagcctat |
119 |
Q |
| |
|
||||||||||||||||| |||| | | ||||| || || ||||||||||| ||||| | || || ||||| || |||| ||||||||| ||||| |
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| T |
22739302 |
ctgtggttacttttggtgcttgcgttgttataggcattccgcttgaatcaggaaagatcttatctgctcttgcaacgttcaaaattcttcaaactcctat |
22739401 |
T |
|
| Q |
120 |
ttataatcttccagatgtaatttcaatgatagcacaaactaaagtttctcttgataggat |
179 |
Q |
| |
|
|||| |||||| || |||||||||||| |||||||| || |||||||| |||||||| |
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|
| T |
22739402 |
ctatagtcttcctgacacaatttcaatgattgcacaaaccaaggtttctctagataggat |
22739461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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