View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21554_low_23 (Length: 202)
Name: NF21554_low_23
Description: NF21554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21554_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 40994294 - 40994128
Alignment:
| Q |
20 |
gcaaagtgctttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgcccattgctt |
119 |
Q |
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| T |
40994294 |
gcaaagtgctttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgcccattgctt |
40994195 |
T |
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| Q |
120 |
caaaaactcacactggacataagtccacaagttatatttgaggtgagtaaaatactttacatttcat |
186 |
Q |
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| T |
40994194 |
gaaaaacttacattggacataagtccacaagttatatttgaggtgagtaaaatactttacatttcat |
40994128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 29 - 186
Target Start/End: Complemental strand, 40986521 - 40986363
Alignment:
| Q |
29 |
tttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgcccattgcttcaaaaactc |
128 |
Q |
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| T |
40986521 |
tttgaatgtaagacatttgattctaaaaacacaaatgcataaatatgagctttgtggatttgaattcttgcttaacagttgcccgttgctagaaaaactc |
40986422 |
T |
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| Q |
129 |
acactggacataagtccacaagttatatttgaggtgagtaaaata-ctttacatttcat |
186 |
Q |
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| T |
40986421 |
acattggacataagtcaacaagttatatttaaggtgagtcaaataccgttacatttcat |
40986363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 40989789 - 40989752
Alignment:
| Q |
136 |
acataagtccacaagttatatttgaggtgagtaaaata |
173 |
Q |
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| T |
40989789 |
acataagtccacaagttatatttgaggtgagtcaaata |
40989752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 21180645 - 21180809
Alignment:
| Q |
20 |
gcaaagtgctttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgcccattgctt |
119 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
21180645 |
gcaaagtgctttgaatgtaaaacatttgactctaaagactaaaatgcattcatatgagctttgtggatttgaattcatgctcaacagttgcccattgctt |
21180744 |
T |
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| Q |
120 |
caaaaactcacactggacataagtccacaagttatatttgaggtgagtaaaatactttacatttc |
184 |
Q |
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||||||||| | ||||||||||||||||| ||||||||||||| ||| |||||||||||||||| |
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| T |
21180745 |
gaaaaactcatattggacataagtccacaacttatatttgaggtcagtcaaatactttacatttc |
21180809 |
T |
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