View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21554_low_3 (Length: 572)
Name: NF21554_low_3
Description: NF21554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21554_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 19 - 559
Target Start/End: Complemental strand, 41381063 - 41380519
Alignment:
| Q |
19 |
agtagtgtacaactttggatttttaatgactacgaatgatgtattttcttttggttttatgtgtttgcattgnnnnnnnncagcattaacaatgttctta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41381063 |
agtagtgtacaactttggatttttaatgactacgaatgatgtattttcttttggttttatgtgtttgcattgttttttttcagcattaacaatgttctta |
41380964 |
T |
|
| Q |
119 |
gccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaagccatgagaaattgtaaacat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41380963 |
gccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaagccatgagaaattgtaaatat |
41380864 |
T |
|
| Q |
219 |
aattactaaattttcttagataatcataatcttactcatcttttcattctaataaattttcagcttccatgtatcatgtggcttaaactctacaatccaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41380863 |
aattactaaattttcttagataatcataatcttactcatcttttcattctattaaattttcagcttccatgtatcatgtggcttaaactctacaatccaa |
41380764 |
T |
|
| Q |
319 |
agagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcattttttctctaagnnnnnnnaataatgtta----taagcacatgtt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
41380763 |
agagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcattttttctctaagtttttttaataatgttataattaagcacatgtt |
41380664 |
T |
|
| Q |
415 |
taatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattggagcattgaggagtattatacttgaagcca |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41380663 |
taatatttgctccatatattacagatatgtattgttcttggggtatgtataatgattctagcacccattggagcattgaggagtattatccttgaagcca |
41380564 |
T |
|
| Q |
515 |
agacctaccagttttactcttaaactccttggcaatgatgatgtc |
559 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41380563 |
agtcctaccagttttactcttaaactccttgacaatgatgatgtc |
41380519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 43855153 - 43855252
Alignment:
| Q |
99 |
cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag |
198 |
Q |
| |
|
||||||| |||||||| | | ||| ||||||||||| ||||||| ||||| ||||||||||||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
43855153 |
cagcattcacaatgtttgtgggcataaccttcccattctttggtgctctccttggattttttggaggattggcatttgctcccacaacatattttgtaag |
43855252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 43856729 - 43856685
Alignment:
| Q |
155 |
ttttttggaggatttgcttttgctccaacaacatattttgtaagc |
199 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
43856729 |
ttttttggaggatttgtttttgctccaatgacatactttgtaagc |
43856685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 99 - 535
Target Start/End: Complemental strand, 7970554 - 7970105
Alignment:
| Q |
99 |
cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag |
198 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7970554 |
cagcattaacaatgttcattgccattaccttcccatttttcggtggcctcttaggattttttggaggatttgcttttgcgccaacaacatattttgtaag |
7970455 |
T |
|
| Q |
199 |
ccatgagaaa-ttgtaaacataattactaaattttcttag-ataatcataatcttactcatcttttcattctaataaattttcagcttccatgtatcatg |
296 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| || | |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7970454 |
ccatgagaaaattgtaaatataattactaaattttcttaggataatcataatcttgcttaacttttcattctattaaattttcagcttccatgtatcatg |
7970355 |
T |
|
| Q |
297 |
tggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgca----ttttttctctaag------- |
385 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| |||| |
|
|
| T |
7970354 |
tggcttaaactctacaaaccaaaaagattcagcttatcttggtggattaattgggtaggtatctttaattattgtattttttttttctttaagttcttga |
7970255 |
T |
|
| Q |
386 |
nnnnnnnaataatgttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattgg |
485 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
7970254 |
ataatttattaatgttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggtatgcataatgattttagcacccattgg |
7970155 |
T |
|
| Q |
486 |
agcattgaggagtattatacttgaagccaagacctaccagttttactctt |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7970154 |
agcattgaggagtattatacttgaagccaagacctaccagttttactctt |
7970105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 99 - 535
Target Start/End: Original strand, 8043155 - 8043604
Alignment:
| Q |
99 |
cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag |
198 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
8043155 |
cagcattaacaatgttcattgccattaccttcccatttttcggtggcctcttaggattttttggaggatttgcttttgctccagcaacatattatgtaag |
8043254 |
T |
|
| Q |
199 |
ccatgagaaattgtaaacataattactaaattttcttag-ataatcataatcttactcatcttttcattctaataaattttcagcttccatgtatcatgt |
297 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||| || | |||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
8043255 |
ccatgagaaattgtaaatgtaattactaaattttcttaggataatcataatcttgcttaacttttcattctattaaattttcagcttccatgtattgtgt |
8043354 |
T |
|
| Q |
298 |
ggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcatttt----ttctctaag-------n |
386 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |||| |
|
|
| T |
8043355 |
ggcttaaactctacaaaccaaagagattcagcttgtcttggtggattaattgggtaggcatctttaattattgtatttttttcttctttaagttcttgaa |
8043454 |
T |
|
| Q |
387 |
nnnnnnaataatg-ttataagcacatgtttaatatttgctccatatattacagatatgtattgttcttggggttagtataatgattctagcacccattgg |
485 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
8043455 |
taatttattaatgtttataagcacatgtttaatatttgctccatatgttacagatatgtgttgttcttggggtatgtataatggttctagcacccattgg |
8043554 |
T |
|
| Q |
486 |
agcattgaggagtattatacttgaagccaagacctaccagttttactctt |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8043555 |
agcattgaggagtattatacttgaagccaagacctaccagttttactctt |
8043604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 99 - 535
Target Start/End: Original strand, 8033219 - 8033668
Alignment:
| Q |
99 |
cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag |
198 |
Q |
| |
|
||||||| ||||||||| | || ||||| ||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8033219 |
cagcattcacaatgttcattgctattacattcccatttttcggtggccttctaggattttttggaggattcgcttttgctccaacaacatattttgtaag |
8033318 |
T |
|
| Q |
199 |
ccatgagaaattgtaaacataattactaaattttctta-gataatcataatcttactcatcttttcattctaataaattttcagcttccatgtatcatgt |
297 |
Q |
| |
|
|||||| |||||||||| ||||| ||| ||||||||| ||| |||||||| || |||||||||||||| || || | |||||||||||||||||||||| |
|
|
| T |
8033319 |
ccatgaaaaattgtaaatataatcactggattttcttaggattatcataattttgctcatcttttcattatattaca-tttcagcttccatgtatcatgt |
8033417 |
T |
|
| Q |
298 |
ggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcattttttctcta----------agnn |
387 |
Q |
| |
|
|||| | || ||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| | ||||||||| | |
|
|
| T |
8033418 |
ggctaatcctttacaaaccaaagagattcagcttctcttggtggactaattgggtaggtatctttaattattgtttgttttctctatcaactttataata |
8033517 |
T |
|
| Q |
388 |
nnnnnaataatgttataagcacatgtttaa--tatttgctcca-tatattacagatatgtattgttcttggggttagtataatgattctagcacccattg |
484 |
Q |
| |
|
||| ||||||| |||||||||||| | ||||||| | | | ||||||||| |||||||| |||| | ||||||||||| | |||||||||| |
|
|
| T |
8033518 |
taatttatattgttatatgcacatgtttaatttctttgctctattttgttacagataagtattgttattggcttatgtataatgattttggcacccattg |
8033617 |
T |
|
| Q |
485 |
gagcattgaggagtattatacttgaagccaagacctaccagttttactctt |
535 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8033618 |
gagcattgaggagtattatacttgaagccaagacctaccagttttactctt |
8033668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 99 - 202
Target Start/End: Complemental strand, 7977326 - 7977223
Alignment:
| Q |
99 |
cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag |
198 |
Q |
| |
|
||||||| ||||||||| | || ||||| ||||||||||| | |||||| || || ||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
7977326 |
cagcattcacaatgttcattgctattacattcccatttttcgatggccttctagggttttttggagggtttgcttttgctccaacaacatactttgtaag |
7977227 |
T |
|
| Q |
199 |
ccat |
202 |
Q |
| |
|
|||| |
|
|
| T |
7977226 |
ccat |
7977223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 358
Target Start/End: Complemental strand, 7976993 - 7976908
Alignment:
| Q |
273 |
aattttcagcttccatgtatcatgtggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtat |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||| |||| | |||| ||||||| |||||| |||||||||| |||| |
|
|
| T |
7976993 |
aattttcagcttccatgtatcatgtggctttcaatctacaaaccaagaaaattcggcttgtcatggtgggctaattgggtatgtat |
7976908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 14197346 - 14197281
Alignment:
| Q |
134 |
ttttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaagc |
199 |
Q |
| |
|
||||| ||||| || || ||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14197346 |
tttttcggtggtctactaggattttttggtggatttgcttttgctccaacaacatactttgtaagc |
14197281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 271 - 341
Target Start/End: Complemental strand, 14197211 - 14197141
Alignment:
| Q |
271 |
taaattttcagcttccatgtatcatgtggcttaaactctacaatccaaagagattcagcttgtcttggtgg |
341 |
Q |
| |
|
||||||||||||| ||||| || ||||||||| | ||||||| |||| |||||||||||||||||||||| |
|
|
| T |
14197211 |
taaattttcagctaccatgcataatgtggcttgcaatctacaaaccaaggagattcagcttgtcttggtgg |
14197141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 338
Target Start/End: Original strand, 34410575 - 34410630
Alignment:
| Q |
283 |
ttccatgtatcatgtggcttaaactctacaatccaaagagattcagcttgtcttgg |
338 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| || |||||||| ||||||||||| |
|
|
| T |
34410575 |
ttccatgtatcatatggcttaaactttacaaacctaagagatttggcttgtcttgg |
34410630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University