View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21554_low_4 (Length: 566)
Name: NF21554_low_4
Description: NF21554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21554_low_4 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 566
Target Start/End: Complemental strand, 17987077 - 17986531
Alignment:
| Q |
18 |
ttcttgaaggatcgaagctacaaatttggaaaacatgatactggataattcttattatattatatatgatgactgaaggaaagnnnnnnnnnncttagca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17987077 |
ttcttgaaggatcgaagctacaaatttggaaaacatgatactggatagttcttattatattatatatgatgactgaaggaaa--aaaaaaaaacttagca |
17986980 |
T |
|
| Q |
118 |
aaaagagaagttgagataaagtttattattaatcaatatttattctcataattttttacataacaaagaatttcaggactgttccttatcatcctcttcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17986979 |
aaaagagaagttgagataaagtttattattaatcaatatttattctcataattttttacataacaaagaatttcaggactgttccttatcatcctcttcg |
17986880 |
T |
|
| Q |
218 |
tcgtccttctcctctttgccatcatcaacctcttcagcttcatcataagtatcatcttcatctttaacatgataataatcatgaccatcaaagctgaaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17986879 |
tcgtccttctcctctttgccatcatcaacctcttcagcttcatcataagtatcatcttcatctttaacatgataataatcatgaccatcaaagctgaaaa |
17986780 |
T |
|
| Q |
318 |
tatattaacaaagaaaaggatggaacaacnnnnnnnggagggggaccaaaccaaaacctcctcagggatttacaaaactataattaggcatccctagcct |
417 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17986779 |
tatattaacaaagaaaaggatggaacaacaaaaaaaggagggggaccaaaccaaaacctcctcagggatttacaaacctataattaggcatccctagcct |
17986680 |
T |
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| Q |
418 |
atctttaaccacattccctctaatactagcagggatccctaaccaaacagtgagatcagcacagcagttgccttctctatagacatgagttaccaaaaaa |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17986679 |
atctttaaccacattccctctaatactagcagggatccctaaccaaacagtgagaccagcacagcagttgccttctctatagacatgagttaccaaaaaa |
17986580 |
T |
|
| Q |
518 |
ttgatgctagaatcaaattgtagccatttttcccatctatttctaagat |
566 |
Q |
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|||||||||||| ||||||| || |||||||||||||| |||||||||| |
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| T |
17986579 |
ttgatgctagaaacaaattgcagacatttttcccatctgtttctaagat |
17986531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 114 - 320
Target Start/End: Complemental strand, 17983655 - 17983457
Alignment:
| Q |
114 |
agcaaaaagagaagttgagataaagttt-attattaatcaatatttattctcataattttttacataacaaagaatttcaggactgttccttatcatcct |
212 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| | |
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| T |
17983655 |
agcaaaaagagaagttaagataaagttttattattaatcaatatttattctcataatttttaacagaacaaagaatttcaggactgtcccttatca---t |
17983559 |
T |
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| Q |
213 |
cttcgtcgtccttctcctctttgccatcatcaacctcttcagcttcatcataagtatcatcttcatctttaacatgataataatcatgaccatcaaagct |
312 |
Q |
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||||| ||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||| | |
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| T |
17983558 |
agtcgtcatccttttcctctttgccatcatcaacctcctcagcttcatc-----tat-atcttcatctttataatgataataatcacgaccatcaaaggt |
17983465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 314 - 472
Target Start/End: Original strand, 37332500 - 37332656
Alignment:
| Q |
314 |
aaaatatattaacaaagaaaaggatggaacaacnnnnnnnggagggggaccaaaccaaaacctcctcagggatttacaaaactataattaggcatcccta |
413 |
Q |
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|||||||| |||||||||||| ||||||||||| |||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| |
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| T |
37332500 |
aaaatataataacaaagaaaaagatggaacaacaaaaaa-ggagagggaccaaaccaaa-cctcctcacggatttacaaacctataattaggcatcccta |
37332597 |
T |
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| Q |
414 |
gcctatctttaaccacattccctctaatactagcagggatccctaaccaaacagtgaga |
472 |
Q |
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| T |
37332598 |
gcctatctttaaccacaatccctctaatactattagggatctctaaccaaacagtgaga |
37332656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 111 - 310
Target Start/End: Complemental strand, 17976026 - 17975827
Alignment:
| Q |
111 |
cttagcaaaaagagaagttgagataaagttt----attattaatcaatatttattctcataatttt-----ttacataacaaagaatttcaggactgttc |
201 |
Q |
| |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | |
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| T |
17976026 |
cttagcaaaaagagaagttgagataaagttttattaatattaatcaatatttattctcataatttttaacataacataacaaagaatttcaggactgtcc |
17975927 |
T |
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| Q |
202 |
cttatcatcctcttcgtcgtccttctcctctttgccatcatcaacctcttcagcttcatcataagtatcatcttcatctttaacatgataataatcatga |
301 |
Q |
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| T |
17975926 |
cttatca---tcgtcgtcgtctgtttcttctttgccatcatcaacctcctcagcttcatc-----tat-agcttcatcttgaacatgatagtaatcacga |
17975836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 473 - 566
Target Start/End: Original strand, 37332690 - 37332783
Alignment:
| Q |
473 |
tcagcacagcagttgccttctctatagacatgagttaccaaaaaattgatgctagaatcaaattgtagccatttttcccatctatttctaagat |
566 |
Q |
| |
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|||||||| |||||||||||||||| ||||||||||||||||||||||||| |||| ||||||| || |||||||||||||| |||||||||| |
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| T |
37332690 |
tcagcacaatagttgccttctctataaacatgagttaccaaaaaattgatgccagaaacaaattgcagacatttttcccatctgtttctaagat |
37332783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 17983739 - 17983693
Alignment:
| Q |
18 |
ttcttgaaggatcgaagctacaaatttggaaaacatgatactggata |
64 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
17983739 |
ttcttgaaggatctaagctacaaatctggaaaacatgatactggata |
17983693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 371 - 472
Target Start/End: Original strand, 20748878 - 20748979
Alignment:
| Q |
371 |
aaacctcctcagggatttacaaaactataattaggcatccctagcctatctttaaccacattccctctaatactagcagggatccctaaccaaacagtga |
470 |
Q |
| |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| |
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| T |
20748878 |
aaacctcctcacggatttacaaacctataattaggcatccctagcctatctttaaccacaatccctctaatactatcagggatctctaaccaaacagtga |
20748977 |
T |
|
| Q |
471 |
ga |
472 |
Q |
| |
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|| |
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|
| T |
20748978 |
ga |
20748979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 473 - 566
Target Start/End: Original strand, 20749013 - 20749106
Alignment:
| Q |
473 |
tcagcacagcagttgccttctctatagacatgagttaccaaaaaattgatgctagaatcaaattgtagccatttttcccatctatttctaagat |
566 |
Q |
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|||||||| ||||||||||||||||| || |||||||||||||||| ||||| |||| ||||||| || |||||||||||||| |||||||||| |
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| T |
20749013 |
tcagcacaacagttgccttctctatatacttgagttaccaaaaaatggatgccagaaacaaattgcagacatttttcccatctgtttctaagat |
20749106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 371 - 421
Target Start/End: Original strand, 1772680 - 1772730
Alignment:
| Q |
371 |
aaacctcctcagggatttacaaaactataattaggcatccctagcctatct |
421 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
1772680 |
aaacctcctcagggatttacaaacctataattaggcatcccaagcctatct |
1772730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 26228659 - 26228591
Alignment:
| Q |
358 |
ggggaccaaaccaaaacctcctcagggatttacaaaactataattaggcatccctagcctatctttaac |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| ||||||||||| || |||| | ||||| |||| |
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| T |
26228659 |
ggggaccaaaccaaaacctcctcagggattaataaatctataattaggtattcctaacttatctctaac |
26228591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 525
Target Start/End: Original strand, 20864348 - 20864400
Alignment:
| Q |
473 |
tcagcacagcagttgccttctctatagacatgagttaccaaaaaattgatgct |
525 |
Q |
| |
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||||||||| |||||||||||||||||| ||| ||||||| |||||| ||||| |
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| T |
20864348 |
tcagcacaggagttgccttctctatagatatgtgttaccataaaattcatgct |
20864400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 426
Target Start/End: Original strand, 23831272 - 23831344
Alignment:
| Q |
354 |
ggagggggaccaaaccaaaacctcctcagggatttacaaaactataattaggcatccctagcctatctttaac |
426 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| || ||| | |||||||| |||| |||||||||||| |
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| T |
23831272 |
ggagggggaccaaaccaaaacctcctcaaggattagtgaacctaaagttaggcattcctaacctatctttaac |
23831344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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