View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21554_low_5 (Length: 481)
Name: NF21554_low_5
Description: NF21554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21554_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Original strand, 32804742 - 32805195
Alignment:
| Q |
19 |
aatgagctgctacaaaataccagagggctgttgtaatgatattgaaggaatgctttcaaagttctggtggggttctgacgaaaccgctaggaaaatccat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32804742 |
aatgagctgctacaaaataccagagggctgttgtaatgatattgaaggaatgctttcaaagttctggcggggttctgacgaaaccgctaggaaaatccat |
32804841 |
T |
|
| Q |
119 |
tggatgagttagaagaggatgggtatttcaaaaggtaaaggagggctggggttccgatctatttcagctttcaacaaagcgttgcttggcaaacaatgtt |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32804842 |
tggatgagttggaagaggatgggtatttcaaaaggtaaaggagggctggggttccgatctatttcagctttcaataaagcgttgcttggcaaacaatgtt |
32804941 |
T |
|
| Q |
219 |
ggcgtatcatccaagacaccacttctcttgttgcaaaaatcttcaaagctagatacttccctcgtaccactttcttggaatcaaagattggatttcaacc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32804942 |
ggcgtatcatccaagacaccacttctcttgttgcaaaaatcttcaaagctagatacttccctcgtaccactttcttggaagcaaagattggatttcaacc |
32805041 |
T |
|
| Q |
319 |
cagctatgcttggagaagtctgttgtctgcaaaaggggttattgaaactggtgcaagatgggaaataggggatgggagtcttgtctgcatcttcaaagat |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32805042 |
cagctatgcttggagaagtctgttgtctgcaaaagaggttattgaaactggtgcaagatgggaaataggggatgggagtcttgtccgcatcttcaaagat |
32805141 |
T |
|
| Q |
419 |
aggtggatcccttgttccaatggttttcttctcaacattccgggaggaggtctc |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32805142 |
aggtggatcccttgttccaatggttttcttctcaacaatccgggaggaggtctc |
32805195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Complemental strand, 6096175 - 6095723
Alignment:
| Q |
19 |
aatgagctgctacaaaataccagagggctgttgtaatgatattgaaggaatgctttcaaagttctggtggggttctgacgaaaccgctaggaaaatccat |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6096175 |
aatgagctgctacaaaatactagagggctgttgtaatgatattgaaggaatgctctcaaagttctggtggggttctgacgaaaccgctaggaaaatccat |
6096076 |
T |
|
| Q |
119 |
tggatgagttagaagaggatgggtatttcaaaaggtaaaggagggctggggttccgatctatttcagctttcaacaaagcgttgcttggcaaacaatgtt |
218 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6096075 |
tggatgagtttgaagaggatgggtatttcaaaaggtaaaggagggctggggttccgatctatttcagctttcaacaaagagttgcttggcaaacaatgtt |
6095976 |
T |
|
| Q |
219 |
ggcgtatcatccaagacaccacttctcttgttgcaaaaatcttcaaagctagatacttccctcgtaccactttcttggaatcaaagattggatttcaacc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6095975 |
ggcgtatcatccaagacaccacttctcttgttgcaaaaatcttcaaagctagatacttccctcgtaccactttcttggaagcaaagattggatttcaacc |
6095876 |
T |
|
| Q |
319 |
cagctatgcttggagaagtctgttgtctgcaaaaggggttattgaaactggtgcaagatgggaaataggggatgggagtcttgtctgcatcttcaaagat |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6095875 |
cagctatgcttggagaagtctgttgtctgcaaaaggggttattgaaactagtgcaagatgggaaataggggatgggagtcttgtccgcatcttcaaagat |
6095776 |
T |
|
| Q |
419 |
aggtggatcccttgttccaatggttttcttctcaacattccgggaggaggtct |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6095775 |
aggtggatcccttgttccaatggttttcttctcaacaatccgggaggaggtct |
6095723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University