View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21554_low_8 (Length: 376)
Name: NF21554_low_8
Description: NF21554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21554_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 16 - 358
Target Start/End: Original strand, 41452316 - 41452658
Alignment:
| Q |
16 |
aagacaaatgtagtcacggcgttagtataaagaaattttttcaaccagccttgttcagcgtccctgagcgcagttattttagatagaaacttcatttccc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41452316 |
aagacaaatgtagtcacggcgttagtataaagaaattttttcaaccagccttgttcagcgtccctgagcgcagttattttagatagaaacttcatttccc |
41452415 |
T |
|
| Q |
116 |
atccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaacttattttgaaacttctcttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41452416 |
atccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaacttattttgaaacttctcttg |
41452515 |
T |
|
| Q |
216 |
caatgatcccaatggaacatttgctaacataacaatgatagttgcaacaaaagcagcaattgaagcaagtccaagatttttatacaaaattaacaatgcc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41452516 |
caatgatcccaatggaacatttgctaacataacaataatagttgcaacaaaagcagcaattgaagcaagtccaagatttttatacaaaattaacaatgcc |
41452615 |
T |
|
| Q |
316 |
agtgtaacttgcaaagctactaaccacaaatcatgcatgtacc |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41452616 |
agtgtaacttgcaaagctactaaccacaaatcatgcatgtacc |
41452658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 358
Target Start/End: Original strand, 41439147 - 41439489
Alignment:
| Q |
16 |
aagacaaatgtagtcacggcgttagtataaagaaattttttcaaccagccttgttcagcgtccctgagcgcagttattttagatagaaacttcatttccc |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41439147 |
aagacaaatgtagtaacggcgttagtataaagaaattttttcaaccagccttgttcagcgtccctgagcgcagttattttagatagaaacttcatttccc |
41439246 |
T |
|
| Q |
116 |
atccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaacttattttgaaacttctcttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41439247 |
atccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaactttttttgaaacttctcttg |
41439346 |
T |
|
| Q |
216 |
caatgatcccaatggaacatttgctaacataacaatgatagttgcaacaaaagcagcaattgaagcaagtccaagatttttatacaaaattaacaatgcc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41439347 |
taatgatcccaatggaacatttgctaacataacaatgatagttgcaacaaaagcagcaattgaagcaagtccaagatttttatacaaaattaacaatgcc |
41439446 |
T |
|
| Q |
316 |
agtgtaacttgcaaagctactaaccacaaatcatgcatgtacc |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41439447 |
agtgtaacttgcaaagctactaaccacaaatcatgcatgtacc |
41439489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 14241302 - 14241643
Alignment:
| Q |
17 |
agacaaatgtagtcacggcgttagtataaagaaattttttcaaccagccttgttcagcgtccctgagcgcagttattttagatagaaacttcatttccca |
116 |
Q |
| |
|
||||||||||||||| ||| ||| |||||| |||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14241302 |
agacaaatgtagtcatggctgaagtgtaaagatattttttcaaccagccttgttcggcatccctgagtgcagttattttagatagaaacttcatttccca |
14241401 |
T |
|
| Q |
117 |
tccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaacttattttgaaacttctcttgc |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14241402 |
tccttgtagtttaaggatcctcatgttccttaaaatttcagacgtggttttcattctagcatcctttgactccatcaacttatcttgaaacttctcttgc |
14241501 |
T |
|
| Q |
217 |
aatgatcccaatggaacatttgctaacataacaatgatagttgcaacaaaagcagcaattgaagcaagtccaagatttttatacaaaattaacaatgcca |
316 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | | |||| |||||||| |||||||||||| ||||||| || |||||||||||||||||||||| |
|
|
| T |
14241502 |
aatgatcccaatggaacatttgccaacataaccacaacggttgaaacaaaagtagcaattgaagcgagtccaatgttcttatacaaaattaacaatgcca |
14241601 |
T |
|
| Q |
317 |
gtgtaacttgcaaagctactaaccacaaatcatgcatgtacc |
358 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
14241602 |
atgtaactttcaaagctagtaaccacaaatcatgcatgtacc |
14241643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 14372018 - 14371678
Alignment:
| Q |
18 |
gacaaatgtagtcacggcgttagtataaagaaattttttcaaccagccttgttcagcgtccctgagcgcagttattttagatagaaacttcatttcccat |
117 |
Q |
| |
|
|||||| |||||||| ||| |||||||||| | ||||||||||| || ||||| ||||| |||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
14372018 |
gacaaacgtagtcacagcggaagtataaagatactttttcaaccacccctgttcggcgtctctgagctcagttattttagacagaaacttcatttcccat |
14371919 |
T |
|
| Q |
118 |
ccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaacttattttgaaacttctcttgca |
217 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| | |
|
|
| T |
14371918 |
ccttgtagtttgaggatcctcatgtttcttaaaatttcagatgtggtcttcattctagtatcctttgactccatcaacttattatgtaacttctcttgga |
14371819 |
T |
|
| Q |
218 |
atgatcccaatggaacatttgctaacataacaatgatagttgcaacaaaagcagcaattgaagcaagtccaagatttttatacaaaattaacaatgccag |
317 |
Q |
| |
|
|||||||| ||||| | |||| |||||||||||||| |||| |||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
14371818 |
atgatcccgttggaagagttgccaacataacaatgatggttgtaacaaaagcagcaactgaagcaagtccaaggtttttatacaaaatcaacaatgccaa |
14371719 |
T |
|
| Q |
318 |
tgtaacttgcaaagctactaaccacaaatcatgcatgtacc |
358 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
14371718 |
tgtaacttgcaaagctactatccacaaatcatgcatatacc |
14371678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 86 - 304
Target Start/End: Original strand, 22751094 - 22751312
Alignment:
| Q |
86 |
cagttattttagatagaaacttcatttcccatccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttga |
185 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||| |||||||||| |||| |||| |
|
|
| T |
22751094 |
cagttatcttagacagaaacttcatttcccatccttgaagtttgagaatcctcatgttccttaaaatctcagatgtggccttcattcttttatctcttga |
22751193 |
T |
|
| Q |
186 |
ctccatcaacttattttgaaacttctcttgcaatgatcccaatggaacatttgctaacataacaatgatagttgcaacaaaagcagcaattgaagcaagt |
285 |
Q |
| |
|
|||||||||| ||||||||||||||| | | ||| | || ||||||||||| ||||| ||||||||||||||||||| | | | ||||||||| | |
|
|
| T |
22751194 |
tgccatcaacttgttttgaaacttctctaggattgacactaaaggaacatttgccaacattacaatgatagttgcaacaagaccggaaattgaagcgatg |
22751293 |
T |
|
| Q |
286 |
ccaagatttttatacaaaa |
304 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
22751294 |
ccaagatttttatacaaaa |
22751312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 106 - 227
Target Start/End: Original strand, 22727795 - 22727916
Alignment:
| Q |
106 |
ttcatttcccatccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaacttattttgaa |
205 |
Q |
| |
|
||||| |||||| |||| |||||||| |||||||||||| ||| ||| ||||| || | |||||||||| |||| || ||||||| |||||| ||||| |
|
|
| T |
22727795 |
ttcatctcccatgcttgaagtttaagaatcctcatgttcattagaatctcagacgtcgccttcattcttttatctttgaactccattaacttaacttgaa |
22727894 |
T |
|
| Q |
206 |
acttctcttgcaatgatcccaa |
227 |
Q |
| |
|
|||||||||||| |||| |||| |
|
|
| T |
22727895 |
acttctcttgcagtgatgccaa |
22727916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 22739188 - 22739072
Alignment:
| Q |
106 |
ttcatttcccatccttgcagtttaaggatcctcatgttccttaaaatttcagatgtggtcttcattcttgtatcctttgactccatcaacttattttgaa |
205 |
Q |
| |
|
||||| |||||| |||| |||||||| |||||||||||| ||| ||| ||||| || | |||||||||| |||| || | ||||| |||||| ||||| |
|
|
| T |
22739188 |
ttcatctcccatgcttgaagtttaagaatcctcatgttcattagaatctcagacgtcgccttcattcttttatctttaaattccattaacttaccttgaa |
22739089 |
T |
|
| Q |
206 |
acttctcttgcaatgat |
222 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
22739088 |
acttctcttgcagtgat |
22739072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 21111959 - 21111908
Alignment:
| Q |
253 |
atagttgcaacaaaagcagcaattgaagcaagtccaagatttttatacaaaa |
304 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||| |||| |
|
|
| T |
21111959 |
atagttgcaacaaaagccgcagttgaagcaagtccaagatttttataaaaaa |
21111908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University