View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21556_low_1 (Length: 625)
Name: NF21556_low_1
Description: NF21556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21556_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 19 - 587
Target Start/End: Complemental strand, 25014692 - 25014121
Alignment:
| Q |
19 |
tagtttcctgtgcgttgaatttgtttaatgattctatccatcaattcctcaggttgattagacttattgaggtgtgatggtagacttgttgttgtacaac |
118 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25014692 |
tagtttcctgtgcgttgaatttgtttgatgattctatccatcaattcctcaggttgattagacttattgaggtgtgatggtagacttgttgttgtacagc |
25014593 |
T |
|
| Q |
119 |
aattgtgttgcaaagatgatggtgaaattttaaagctaattaatatgacagagaattggactagaaagattgattagatagagagaaaaatgtgcattaa |
218 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25014592 |
aattgtgttgcaatgatgatggtgaaattttaaagctaattaatatgacagagaattggactagaaaggttgattagatagagagaaaaatgtgcattaa |
25014493 |
T |
|
| Q |
219 |
atgactcttaagctgtgcaacattgcacaggttagaaaacccctaaatgtaatacagatgacagaactctaggaaatccaggacagtttgcttgtgctgg |
318 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||| |
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| T |
25014492 |
atgactcttaagctgtgcaacattgcacaggttagaaaacccctaaatgtaatacagatgacacaactctaagaaatccagggcagtttgcttgtgctgg |
25014393 |
T |
|
| Q |
319 |
aatattcagaaagggttgttttgcaatcaatcttggtatttcaaatgctctctttgctgagc----taatgggagtgagtattgttgtggaaactgccta |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||| |
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| T |
25014392 |
aatattcagaaagggttgttttgcaatcaatcttggtatttcaaatgctctctttgctgagctaattaatgggagtgagtattgctgtggaaactgacta |
25014293 |
T |
|
| Q |
415 |
tatgaagaattggaattacttatggattgaaagtgattctaaattagcttgtttggcgttcaagtctccttatatagtcccttggaaacttaagaacata |
514 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25014292 |
tatgaagaattggaatcacttatggattgaaagtgattctaaaatagcttgtttggcgttcaagtctccttatatagtcccttggaaacttaagaacata |
25014193 |
T |
|
| Q |
515 |
tggaaaaattgtctactcaaactatcctctattgaatttcataatcacacacatctaatcaaattgttgtttg |
587 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25014192 |
aggaaaaattgtctactcaaactatcctcta-tgaatttcataatcacacacatctaatcaaattgttgtttg |
25014121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 25015126 - 25015183
Alignment:
| Q |
205 |
aaaatgtgcattaaatgactcttaagctgtgcaacattgcacaggttagaaaacccct |
262 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
25015126 |
aaaatgtgcattaaatgactcttaagctatgcaacattgcacaggttagaaaaaccct |
25015183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 329 - 571
Target Start/End: Complemental strand, 33068308 - 33068068
Alignment:
| Q |
329 |
aagggttgttttgcaatcaatcttggtatttcaaatgctctctttgctgagctaatgggagtgagtattgttgtggaaactgcctatatgaagaattgga |
428 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||| | || |
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| T |
33068308 |
aagggttgttttgcaatcaatcttggaatttcaaatgctctctttgctaagctaatgggagtgattactgttgtggaaactgcctatatgaagaa-tcga |
33068210 |
T |
|
| Q |
429 |
attacttatggattgaaagtgattctaaattagcttgtttggcgttcaagtctccttatatagtcccttggaaacttaagaacatatggaaaaattgtct |
528 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||| || |
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| T |
33068209 |
atcacttatggattgaaagtgattctaaattagcttgcttggcgttcaagtctcctcatatagtgccttggaaacttaagaacagatggaaaaatcccct |
33068110 |
T |
|
| Q |
529 |
actcaaactatcctctattgaatttcataatcacacacatcta |
571 |
Q |
| |
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| ||||||| |||| || |||||||||| |||||||||||||| |
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| T |
33068109 |
agtcaaactgtcctata-tgaatttcatgatcacacacatcta |
33068068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 9915281 - 9915318
Alignment:
| Q |
225 |
cttaagctgtgcaacattgcacaggttagaaaacccct |
262 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
9915281 |
cttaagctgtgcaacattgcaaaggttagaaaaaccct |
9915318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 519
Target Start/End: Original strand, 19955154 - 19955338
Alignment:
| Q |
335 |
tgttttgcaatcaatcttggtatttcaaatgctctctttgctgagctaatgggagtgagtattgttgtggaaactgcctatatgaagaattggaattact |
434 |
Q |
| |
|
||||||||||||||||| || ||||||||||| || ||| |||||| || |||||||| | | ||| |||||| ||| ||| || || | |||| ||| |
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|
| T |
19955154 |
tgttttgcaatcaatctaggaatttcaaatgccctttttcctgagccaaagggagtgattttagttttggaaattgcttatgacaaaaactagaatcact |
19955253 |
T |
|
| Q |
435 |
tatggattgaaagtgattctaaattagcttgtttggcgttcaagtctccttatatagtcccttggaaacttaagaacatatggaa |
519 |
Q |
| |
|
|||||||||||||||||| || || ||| ||||| |||||||||| | | ||||| |||||||| || ||||| |||||||| |
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|
| T |
19955254 |
tatggattgaaagtgatttaaagttggctaccttggccttcaagtctcatcacatagttccttggaagctcaagaatatatggaa |
19955338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 27542535 - 27542498
Alignment:
| Q |
225 |
cttaagctgtgcaacattgcacaggttagaaaacccct |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
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| T |
27542535 |
cttaagctgtgcaacattgcacaggttagaaaaaccct |
27542498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 27543363 - 27543395
Alignment:
| Q |
225 |
cttaagctgtgcaacattgcacaggttagaaaa |
257 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
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|
| T |
27543363 |
cttaagctgtgcaacattgcacatgttagaaaa |
27543395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 22707248 - 22707195
Alignment:
| Q |
204 |
aaaaatgtgcattaaatgactcttaagctgtgcaacattgcacaggttagaaaa |
257 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||||||||||||||||||||| |
|
|
| T |
22707248 |
aaaaatgtgcattaattaaggcttaagctgtgcaacattgcacaggttagaaaa |
22707195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 22689744 - 22689806
Alignment:
| Q |
204 |
aaaaatgtgcattaaatgactcttaagctgtgcaacattgcacaggttagaaaacccctaaat |
266 |
Q |
| |
|
||||| ||||||||| ||| ||||| ||||||||||||||||| ||||||||| |||||||| |
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|
| T |
22689744 |
aaaaaagtgcattaattgattcttatcctgtgcaacattgcacatgttagaaaaaccctaaat |
22689806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 17833846 - 17833884
Alignment:
| Q |
224 |
tcttaagctgtgcaacattgcacaggttagaaaacccct |
262 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
17833846 |
tcttaagctgtgcaacattgcacatgttagaaaatccct |
17833884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 43230512 - 43230470
Alignment:
| Q |
215 |
ttaaatgactcttaagctgtgcaacattgcacaggttagaaaa |
257 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
43230512 |
ttaaatgactcttaaactgtgcaacattgtacatgttagaaaa |
43230470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 15025756 - 15025719
Alignment:
| Q |
225 |
cttaagctgtgcaacattgcacaggttagaaaacccct |
262 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
15025756 |
cttaagctgtgcaagattgcacaggttagaaaaaccct |
15025719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 44902209 - 44902156
Alignment:
| Q |
204 |
aaaaatgtgcattaaatgactcttaagctgtgcaacattgcacaggttagaaaa |
257 |
Q |
| |
|
||||| ||||||||| || ||||||||||||||| ||||||||||||||||| |
|
|
| T |
44902209 |
aaaaaagtgcattaactgcttcttaagctgtgcaatgttgcacaggttagaaaa |
44902156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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