View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21556_low_2 (Length: 502)
Name: NF21556_low_2
Description: NF21556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21556_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Complemental strand, 37008956 - 37008491
Alignment:
| Q |
19 |
atattgataggtaattcgagaaaacaaaggtatttctgatgtgatgcctcacataatctacatatctagagagaagaggccaaaacaaccacatcatcac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37008956 |
atattgataggtaattcgagaaaacaaaggtatttctgatgtgatgcctcacataatctacatatctagagagaagaggccaaaacaaccacatcatcac |
37008857 |
T |
|
| Q |
119 |
aaagctggtgcaatgaatgtcttggtaacatttatatttcttcaatcaactccttgaattgttaatctttcattacaacattgtaataaggcaatgtgtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37008856 |
aaagctggtgcaatgaatgtcttggtaacatttatatttcttcaatcaactccttgaattgttaatctttcattacaacattgtaataaggcaatgtgtt |
37008757 |
T |
|
| Q |
219 |
tccttaatttcgattcaaaagttctcataatgtgtattgtatacagacaagagtctctggattgatgacaaatgctccctttatgctaaacttagattgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37008756 |
tccttaatttcgattcaaaagttctcataatgtgtattgtatacagacaagagtctctggattgatgacaaatgctccctttatgctaaacttagattgt |
37008657 |
T |
|
| Q |
319 |
gacatgtatgtaaacaattctaagattgtactacatgccctttgcattttgttggattcaaagggagaaaaagaagttgcatttgctcaatgtccacaac |
418 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37008656 |
gacatgtatgtgaacaattctaagattgtactacatgccctttgcattttgttggattcaaagggagaaaaagaagttgcatttgctcaatgtccacaac |
37008557 |
T |
|
| Q |
419 |
gattctatgatgcggtaaaagatgatgcttatggaaatcagcttgtggctttgcctatggtgagtc |
484 |
Q |
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| T |
37008556 |
gattctatgatgcggtaaaagatgatgcttatggaaatcagcttgtggctttgcctatggtgagtc |
37008491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 261 - 467
Target Start/End: Complemental strand, 37025896 - 37025690
Alignment:
| Q |
261 |
acagacaagagtctctggattgatgacaaatgctccctttatgctaaacttagattgtgacatgtatgtaaacaattctaagattgtactacatgccctt |
360 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| || || | |||||||||||||||||| | || |||||| ||||||||| ||||| ||| | |
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| T |
37025896 |
acagacaagagtctctggaatgatgacaaatgctcctttcatattgaacttagattgtgacatgcacgtgaacaatcctaagattgctctacacgccttg |
37025797 |
T |
|
| Q |
361 |
tgcattttgttggattcaaagggagaaaaagaagttgcatttgctcaatgtccacaacgattctatgatgcggtaaaagatgatgcttatggaaatcagc |
460 |
Q |
| |
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||||||||||| |||||||| || ||||| ||||||||||||| ||||||||| |||| ||||||||||| ||||||| ||| ||| ||||||||||| |
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| T |
37025796 |
tgcattttgttagattcaaaaggggaaaaggaagttgcatttgttcaatgtccccaacaattctatgatggtctaaaagacgatccttttggaaatcagc |
37025697 |
T |
|
| Q |
461 |
ttgtggc |
467 |
Q |
| |
|
||||||| |
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|
| T |
37025696 |
ttgtggc |
37025690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 411
Target Start/End: Complemental strand, 37044892 - 37044743
Alignment:
| Q |
262 |
cagacaagagtctctggattgatgacaaatgctccctttatgctaaacttagattgtgacatgtatgtaaacaattctaagattgtactacatgcccttt |
361 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||| | ||| |||| ||||||||| ||| |||||| | |||||| | | |||||| ||| |
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| T |
37044892 |
cagacaagagtctctggattgatgaccaatgctccttttatgttgaacgtagactgtgacatggttgtgaacaatcccaagattatgcaacatgctattt |
37044793 |
T |
|
| Q |
362 |
gcattttgttggattcaaagggagaaaaagaagttgcatttgctcaatgt |
411 |
Q |
| |
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|||||||| ||||||| ||| | | ||||| ||||| |||| ||||||| |
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| T |
37044792 |
gcattttggtggattcgaagagtgggaaagatgttgcttttgttcaatgt |
37044743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 37035801 - 37035762
Alignment:
| Q |
63 |
tgcctcacataatctacatatctagagagaagaggccaaa |
102 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |
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| T |
37035801 |
tgcctcacttaatctacatatctagagagaagaggccaaa |
37035762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 93
Target Start/End: Complemental strand, 37026267 - 37026237
Alignment:
| Q |
63 |
tgcctcacataatctacatatctagagagaa |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
37026267 |
tgcctcacataatctacatatctagagagaa |
37026237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 427
Target Start/End: Original strand, 17657647 - 17657812
Alignment:
| Q |
262 |
cagacaagagtctctggattgatgacaaatgctccctttatgctaaacttagattgtgacatgtatgtaaacaattctaagattgtactacatgcccttt |
361 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| ||||| ||| | ||| | ||||||||||||| |||||||||| | || ||||| | |||||| | | |
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| T |
17657647 |
cagacaagagtctctgggttgattaccaatgcacccttcatgttgaacgtggattgtgacatgtttgtaaacaatccaaatattgttatgcatgccttgt |
17657746 |
T |
|
| Q |
362 |
gcattttgttggattcaaagggagaaaaagaagttgcatttgctcaatgtccacaacgattctatg |
427 |
Q |
| |
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|||||||| | || || || || ||||||||||| || |||||||||||||| || | |||||||| |
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|
| T |
17657747 |
gcattttgcttgactccaaaggggaaaaagaagtagcttttgctcaatgtccccagcaattctatg |
17657812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 17657492 - 17657564
Alignment:
| Q |
74 |
atctacatatctagagagaagaggccaaaacaaccacatcatcacaaagctggtgcaatgaatgtcttggtaa |
146 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| |||||||| ||||||| |
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| T |
17657492 |
atctacatatctagagagaagaggccaaagcaaccacatcatttcaaagccggtgccatgaatgtgttggtaa |
17657564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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