View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21556_low_3 (Length: 459)
Name: NF21556_low_3
Description: NF21556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21556_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 442
Target Start/End: Complemental strand, 6070999 - 6070576
Alignment:
| Q |
19 |
gaagagcagctcttgaagtaattgaagaaaacaaggtaaggggaagaaaaactgacattgttttcaacacagttaaattactatctaatgaaatgtaacc |
118 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| |
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| T |
6070999 |
gaagagaagctcttgatgtaattgaagaaaacaaggtaaggggaagaaaaactgacatttttttcaacacagttaaattactatctaataaaacgtaacc |
6070900 |
T |
|
| Q |
119 |
aattaattggataaattttactttcttgtcctgcaggggagtagcttcattgaaggaataatgttggatttgtctcaaaataatgatttatctttaagtg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6070899 |
aattaattggataaattttactttcttgtcctgcaggggagtagcttcattgaaggcataatgttggatttgtctcaaaataatgatttatctttaagtg |
6070800 |
T |
|
| Q |
219 |
ccgacacattcagcaagatgaaaggcttaagaattcttaaattctatgcaccctctaaccagagttgtactactacatacctcgaccttcccgaatttct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6070799 |
ccgacacattcagcaagatgaaaggcttaagaattcttaaattctatgcaccctctaaccagagttgtactactacatacctcgaccttcccgaatttct |
6070700 |
T |
|
| Q |
319 |
tgagccattttcaaataaactcaggtattttgaatggaatggatacccttttgagtcgcttccaaaaccctttaaggctaagtttcttgttgagatccgc |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6070699 |
tgagccattttcaaataaactcaggtattttgaatggaatggatacccttttgagtctcttccaaaaccttttaaggctaagtttcttgttgagatccgc |
6070600 |
T |
|
| Q |
419 |
atgcggtacagcattgttaaagaa |
442 |
Q |
| |
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| T |
6070599 |
atgcggtacagcattgttaaagaa |
6070576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 110 - 439
Target Start/End: Complemental strand, 6195185 - 6194853
Alignment:
| Q |
110 |
aatgtaaccaattaattggataaattttactttcttgtcctg-caggggagtagcttcattgaaggaataatgttggatttgtctcaaaataatgattta |
208 |
Q |
| |
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|||||| | |||| |||||||| |||| |||||||| || || ||||||||||||| |||||||| |||| ||||||||||| |||||||||||||| |
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| T |
6195185 |
aatgtagctaattgattggatacattt-actttcttctcttgtcaggggagtagctcaattgaaggcataacattggatttgtcacaaaataatgatttg |
6195087 |
T |
|
| Q |
209 |
tctttaagtgccgacacattcagcaagatgaaaggcttaagaattcttaaattctatgcaccctctaacc---agagttgtactactacatacctcgacc |
305 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||||||| ||| |
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| T |
6195086 |
cctttaagtgccgacacattcaccaagatgaaagccttaagaattcttaaattccatgcaccctctaacctgcagagatgtactaacacatacctcaacc |
6194987 |
T |
|
| Q |
306 |
ttcccgaatttcttgagccattttcaaataaactcaggtattttgaatggaatggatacccttttgagtcgcttccaaaaccctttaaggctaagtttct |
405 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || |||||| ||| ||| | || |||||||| |
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| T |
6194986 |
ttcccaaatttcttgagccattttcaaataaactgaggtattttgagtggaatggatacccttttgaatctcttccacaacatttttatgccaagtttct |
6194887 |
T |
|
| Q |
406 |
tgttgagatccgcatgcggtacagcattgttaaa |
439 |
Q |
| |
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|||||||||||| |||| | |||||| ||||||| |
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| T |
6194886 |
tgttgagatccgtatgccgcacagcaatgttaaa |
6194853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 152 - 439
Target Start/End: Original strand, 37451815 - 37452105
Alignment:
| Q |
152 |
caggggagtagcttcattgaaggaataatgttggatttgtctcaaaataatgatttatctttaagtgccgacacattcagcaagatgaaaggcttaagaa |
251 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||||||||||||| |||| |||| |||||| | |||| ||||||| ||||||||||| ||| |||| |
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| T |
37451815 |
caggggagtagctcaattgaagggataatgttggatttgtctcaaaacaatgttttacctttaacttccgatacattcaccaagatgaaagccttgagaa |
37451914 |
T |
|
| Q |
252 |
ttcttaaattctatgcaccctctaac---cagagttgtactactacatacctcgaccttcccgaatttcttgagccattttcaaataaactcaggtattt |
348 |
Q |
| |
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||||||||||| |||||||||||| | |||| ||||||| || |||| | ||||||| |||||||| ||| ||||||||| ||||| |||||||| |
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| T |
37451915 |
ttcttaaattccatgcaccctctagcctgcagaaatgtactatcacgtacccctaccttccaaaatttcttaagctattttcaaaaaaacttaggtattt |
37452014 |
T |
|
| Q |
349 |
tgaatggaatggatacccttttgagtcgcttccaaaaccctttaaggctaagtttcttgttgagatccgcatgcggtacagcattgttaaa |
439 |
Q |
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||| ||| ||||||||||||||||||| ||||| | || ||| | |||||||||||||||||||||||||||| | |||||| ||||||| |
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| T |
37452015 |
tgagtggtatggatacccttttgagtctcttccgcagccttttcatgctaagtttcttgttgagatccgcatgccgcacagcaatgttaaa |
37452105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 37451701 - 37451735
Alignment:
| Q |
23 |
agcagctcttgaagtaattgaagaaaacaaggtaa |
57 |
Q |
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||||||| ||||||||||||||||||||||||||| |
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| T |
37451701 |
agcagcttttgaagtaattgaagaaaacaaggtaa |
37451735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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