View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21556_low_4 (Length: 371)
Name: NF21556_low_4
Description: NF21556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21556_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 48966022 - 48966384
Alignment:
| Q |
1 |
gatgggtttgttctaagggtttccatgagacatacggtaaacagggagaaaccattgaaggcgagattggggacccgaagcttacgggccaagtcatgaa |
100 |
Q |
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| T |
48966022 |
gatgggtttgttctaagggtttccatgagacatacggtaaacagggagaaaccattgaaggcgagattcgggacccaaagcttactggccaagtcatgaa |
48966121 |
T |
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| Q |
101 |
cccaagggtacaagaagtcaccaatgatacagtcaggtggatctttctccatgaaatactgaattggttcttggaggagcattgctccagcgtatagttt |
200 |
Q |
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| T |
48966122 |
cccaagggtacaagaagtcaccaatgatacagtcaggtggatctttctccatgaaattctgaattggttcttggaggagcattgctcctgcgtatagttt |
48966221 |
T |
|
| Q |
201 |
gccggaggaggcaagatcaggggtgttggacatggattcgacaccggaggggagaccaacttgttggtagggaaaatcaacggtgtgaatgcggaggaag |
300 |
Q |
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| T |
48966222 |
gccggaggaggcaagatcaggggtgttggacatggattcgacaccggaggggagaccaacttgttggtaggggaaatcaacggtgtgaatgcggaggaag |
48966321 |
T |
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| Q |
301 |
aaaggatctatggagggaagagatttggaaaggaagttggcgttagagggagttgtgatgatg |
363 |
Q |
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| T |
48966322 |
agaggatctatggagggaagagatttggaaaggaagttggcgttagagggagttgtgatgatg |
48966384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 48958837 - 48959018
Alignment:
| Q |
4 |
gggtttgttctaagggtttccatgagacatacggtaaacagggagaaaccattgaaggcgagattggggacccgaagcttacgggccaagtcatgaaccc |
103 |
Q |
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| T |
48958837 |
gggtttattctaagggattccatgagggagacggtaaagagggagaaaccagtgaaggcgatggtgggaatttgaagcttatgggccaagtcataaaccc |
48958936 |
T |
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| Q |
104 |
aagggtacaagaagtcaccaatgatacagtcaggtggatctttctccatgaaatactgaattggttcttggaggagcattgc |
185 |
Q |
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| T |
48958937 |
aggggtttatgcagtcagcgattatgcagtcaggtggatccttctccatgaaatcgtgaataggttcacggaggagcattgc |
48959018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 48962978 - 48963159
Alignment:
| Q |
4 |
gggtttgttctaagggtttccatgagacatacggtaaacagggagaaaccattgaaggcgagattggggacccgaagcttacgggccaagtcatgaaccc |
103 |
Q |
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| T |
48962978 |
gggtttattctaagggattccatgagggagacagtaaatatggagaaaccagtgaaggcaatggtggggatctgaagcttatgacccaagtcataaaccc |
48963077 |
T |
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| Q |
104 |
aagggtacaagaagtcaccaatgatacagtcaggtggatctttctccatgaaatactgaattggttcttggaggagcattgc |
185 |
Q |
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| T |
48963078 |
atgggtatatacagtcggtgatgatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgc |
48963159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 13441016 - 13441077
Alignment:
| Q |
124 |
atgatacagtcaggtggatctttctccatgaaatactgaattggttcttggaggagcattgc |
185 |
Q |
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| T |
13441016 |
atgatacaatctggtggatctttctccatgaaatcctcaatggatccatggaggagcattgc |
13441077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 12589660 - 12589508
Alignment:
| Q |
5 |
ggtttgttctaagggtttccatgagacatacggtaaacagggagaaaccattgaaggcgagattggggacccgaagcttacgggccaagtcatgaaccca |
104 |
Q |
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| T |
12589660 |
ggtttgttctaagggattccaaaagagagactgtaaagagggagaaaacggtgaaggcgaggatggggatttgaagcttatgggccatgtcataaacccc |
12589561 |
T |
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| Q |
105 |
agggtacaagaagtcaccaatgatacagtcaggtggatctttctccatgaaat |
157 |
Q |
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| T |
12589560 |
tgggtatatgcaatcggcaatgatgtagtcaggtggatccttctgcatcaaat |
12589508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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