View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21556_low_5 (Length: 295)
Name: NF21556_low_5
Description: NF21556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21556_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 280
Target Start/End: Original strand, 38309193 - 38309457
Alignment:
| Q |
15 |
agatgaagatataaagagaatggttgaaaggatgttgaccaaagtttgagaaatattgggaagagtatagtgttgttcttgcattgggagcggttcttga |
114 |
Q |
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| T |
38309193 |
agatgaagatataaagagaatggttgaaaggatgttgaccaa-gtttgagaaatattgggaagagtatagtgttgttcttgcattgggagcggttcttga |
38309291 |
T |
|
| Q |
115 |
cccaaggataaagctttccacattggcttattgttactcaaaacttgatgcatcaacctgcgaaaggaagttgcagcaagtaaagagcaagttgtacatg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38309292 |
cccaaggataaagctttccacattggcttattgttactcaaaacttaatgcatcaacctgcgaaaggaagttgcagcaagtaaagagcaagttgtacatg |
38309391 |
T |
|
| Q |
215 |
ctatttcacaagaattcttgcaaaagtacttcttctggcgtgcaaagaacaattcaggaccaatct |
280 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38309392 |
ctatttcacaagaattcttgcaaaagtacttcttctggcgtgcaaagaacaattcaggaccaatct |
38309457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 280
Target Start/End: Original strand, 38300546 - 38300810
Alignment:
| Q |
15 |
agatgaagatataaagagaatggttgaaaggatgttgaccaaagtttgagaaatattgggaagagtatagtgttgttcttgcattgggagcggttcttga |
114 |
Q |
| |
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||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
38300546 |
agatgaagatataaagagaatggctgaaaggatgctgaccaa-gtttgagaaatattgggatgagtatagtgttgttcttgcaatgggagcggttcttga |
38300644 |
T |
|
| Q |
115 |
cccaaggataaagctttccacattggcttattgttactcaaaacttgatgcatcaacctgcgaaaggaagttgcagcaagtaaagagcaagttgtacatg |
214 |
Q |
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||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||| |
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| T |
38300645 |
cccaaggattaagctttcaacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagttgtacatg |
38300744 |
T |
|
| Q |
215 |
ctatttcacaagaattcttgcaaaagtacttcttctggcgtgcaaagaacaattcaggaccaatct |
280 |
Q |
| |
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|||||| ||||| ||||| ||||||||||| ||||| |||||||||||| || |||||||||||| |
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| T |
38300745 |
ctatttgacaagtattctagcaaaagtactccttcttgcgtgcaaagaattatccaggaccaatct |
38300810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 15 - 280
Target Start/End: Original strand, 38321291 - 38321555
Alignment:
| Q |
15 |
agatgaagatataaagagaatggttgaaaggatgttgaccaaagtttgagaaatattgggaagagtatagtgttgttcttgcattgggagcggttcttga |
114 |
Q |
| |
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|||||||| |||||||||||||| |||||||||| ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38321291 |
agatgaagctataaagagaatggctgaaaggatgatgagcaa-gtttgagaaatattgggatgagtatagtgttgttcttgcattgggagcggttcttga |
38321389 |
T |
|
| Q |
115 |
cccaaggataaagctttccacattggcttattgttactcaaaacttgatgcatcaacctgcgaaaggaagttgcagcaagtaaagagcaagttgtacatg |
214 |
Q |
| |
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|||| |||| ||| |||| ||||||||| ||||||||||||||||||||| || |||| |||||||||||||| |||||||||| |||||||||||| |
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| T |
38321390 |
cccacggatgaagttttctacattggctcattgttactcaaaacttgatgtttcggcctgtgaaaggaagttgcaagaagtaaagagtaagttgtacatg |
38321489 |
T |
|
| Q |
215 |
ctatttcacaagaattcttgcaaaagtacttcttctggcgtgcaaagaacaattcaggaccaatct |
280 |
Q |
| |
|
|||||| ||||| ||||| ||||||||| ||||||||| ||||||||||| ||||||||| ||||| |
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| T |
38321490 |
ctatttgacaagtattctagcaaaagtatttcttctggggtgcaaagaactattcaggacgaatct |
38321555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 280
Target Start/End: Original strand, 38326041 - 38326305
Alignment:
| Q |
15 |
agatgaagatataaagagaatggttgaaaggatgttgaccaaagtttgagaaatattgggaagagtatagtgttgttcttgcattgggagcggttcttga |
114 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| ||| ||| |||||| |||| |||| | ||||| |||||||||||||||||||||||||||||||| |
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| T |
38326041 |
agatgaagttataaagagaatggctgaaaggatgatgagcaa-gtttgacaaattttggaatgagtacagtgttgttcttgcattgggagcggttcttga |
38326139 |
T |
|
| Q |
115 |
cccaaggataaagctttccacattggcttattgttactcaaaacttgatgcatcaacctgcgaaaggaagttgcagcaagtaaagagcaagttgtacatg |
214 |
Q |
| |
|
|||| |||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| || |||||||||||| |
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| T |
38326140 |
cccacggattaaattttcaacattggcttattgttactcaaaacttgatgcatcaacctgtgaaaggaagttgcaacaagtaaggacgaagttgtacatg |
38326239 |
T |
|
| Q |
215 |
ctatttcacaagaattcttgcaaaagtacttcttctggcgtgcaaagaacaattcaggaccaatct |
280 |
Q |
| |
|
|||||| |||| ||||| || || |||||||||||||| |||||||||| |||||| ||||||| |
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| T |
38326240 |
ctatttggcaagtattctagccaacgtacttcttctggcatgcaaagaactgttcagggccaatct |
38326305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 15 - 280
Target Start/End: Original strand, 38317196 - 38317460
Alignment:
| Q |
15 |
agatgaagatataaagagaatggttgaaaggatgttgaccaaagtttgagaaatattgggaagagtatagtgttgttcttgcattgggagcggttcttga |
114 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||||| ||| | | |||||| ||||||||||| ||||||||||||||||||||| ||||||| |||||||| |
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| T |
38317196 |
agataaagttataaagagaatggctgaaaggatgatgagcga-gtttgacaaatattgggatgagtatagtgttgttcttgcactgggagcagttcttga |
38317294 |
T |
|
| Q |
115 |
cccaaggataaagctttccacattggcttattgttactcaaaacttgatgcatcaacctgcgaaaggaagttgcagcaagtaaagagcaagttgtacatg |
214 |
Q |
| |
|
|||| |||| ||| |||| || ||||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||||||||| |||||||||||| |
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| T |
38317295 |
cccacggatgaagttttcgacgttggcttattgttactcaaaacttgatccatcaacctgcgagcagaagttgcaactagtaaagagaaagttgtacatg |
38317394 |
T |
|
| Q |
215 |
ctatttcacaagaattcttgcaaaagtacttcttctggcgtgcaaagaacaattcaggaccaatct |
280 |
Q |
| |
|
|||||| ||||| ||||| ||||||| |||||||||||| | ||||||| | ||||||||||||| |
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|
| T |
38317395 |
ctatttgacaagtattctagcaaaagcacttcttctggcctaaaaagaactactcaggaccaatct |
38317460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 56 - 280
Target Start/End: Original strand, 38313827 - 38314049
Alignment:
| Q |
56 |
aagtttgagaaatattgggaagagtatagtgttgttcttgcattgggagcggttcttgacccaaggataaagctttccacattggcttattgttactcaa |
155 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||| |||| || |||| | ||||||| ||||||||||| |
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|
| T |
38313827 |
aagtttaagaaatattgggatgagta--gtgttgttcttgcaatgggagcagttcttgacccacggatgaaattttcaagattggctgcttgttactcaa |
38313924 |
T |
|
| Q |
156 |
aacttgatgcatcaacctgcgaaaggaagttgcagcaagtaaagagcaagttgtacatgctatttcacaagaattcttgcaaaagtacttcttctggcgt |
255 |
Q |
| |
|
|||| ||| ||||||| || ||| |||||||||| ||||||||| |||||||||||||||||| |||| | ||| ||||||||||||||||| | || |
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|
| T |
38313925 |
aactagatccatcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtacatgctatttgccaagtactctagcaaaagtacttcttctagggt |
38314024 |
T |
|
| Q |
256 |
gcaaagaacaattcaggaccaatct |
280 |
Q |
| |
|
||||| ||| ||| ||| ||||||| |
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|
| T |
38314025 |
gcaaacaactatttagggccaatct |
38314049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 38306564 - 38306707
Alignment:
| Q |
137 |
ttggcttattgttactcaaaacttgatgcatcaacctgcgaaaggaagttgcagcaagtaaagagcaagttgtacatgctatttcacaagaattcttgca |
236 |
Q |
| |
|
|||||| |||||||||||||||| ||| ||||||| || ||| |||||||||| ||||||||| |||||||||||||||||| ||||| ||||| ||| |
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| T |
38306564 |
ttggctgattgttactcaaaactcgatccatcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtacatgctatttgacaagtattctagca |
38306663 |
T |
|
| Q |
237 |
aaagtacttcttctggcgtgcaaagaacaattcaggaccaatct |
280 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||||| ||||||| |
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|
| T |
38306664 |
aaagtacttcttctggtatgcaaacaactgttcagggccaatct |
38306707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 38306455 - 38306536
Alignment:
| Q |
15 |
agatgaagatataaagagaatggttgaaaggatgttgaccaaagtttgagaaatattgggaagagtatagtgttgttcttgca |
97 |
Q |
| |
|
|||||||| |||| |||||||| | |||||||| || ||| |||| ||||||||||||| ||| ||||||||||||||||| |
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| T |
38306455 |
agatgaagttatagcgagaatggctaaaaggatgatgggcaa-gtttaagaaatattgggatgagcatagtgttgttcttgca |
38306536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 15 - 273
Target Start/End: Complemental strand, 38850149 - 38849892
Alignment:
| Q |
15 |
agatgaagatataaagagaatggttgaaaggatgttgaccaaagtttgagaaatattgggaagagtatagtgttgttcttgcattgggagcggttcttga |
114 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||| ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38850149 |
agatgaagatataaagaaaatggctgaaaggatgatgagcaa-gtttgagaaatattgggatgagtatagtgttgttcttgcattgggagcggttcttga |
38850051 |
T |
|
| Q |
115 |
cccaaggataaagctttccacattggcttattgttactcaaaacttgatgcatcaacctgcgaaaggaagttgcagcaagtaaagagcaagttgtacatg |
214 |
Q |
| |
|
|||| |||| ||| || | || |||||||||||||| |||||||| |||||||||||||| ||||||||| | |||||||||||||| ||||||| |||| |
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|
| T |
38850050 |
cccacggatgaagtttacaaccttggcttattgttattcaaaactggatgcatcaacctgtgaaaggaagctacagcaagtaaagagaaagttgtgcatg |
38849951 |
T |
|
| Q |
215 |
ctatttcacaagaattcttgcaaaagtacttcttctggcgtgcaaagaacaattcagga |
273 |
Q |
| |
|
|||||| | ||| ||||| |||| || ||| || |||| || |||||||| ||| |||| |
|
|
| T |
38849950 |
ctatttgagaagcattctggcaacagcactactgctggggttcaaagaactattaagga |
38849892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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