View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21556_low_7 (Length: 257)
Name: NF21556_low_7
Description: NF21556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21556_low_7 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 5745685 - 5745916
Alignment:
| Q |
14 |
tccccattgcagttgcggtggttttcaaggtgatttctggtgcatttcttcatcccctatgtgttgtttatgtggccccttttcacgcagtggtggtgcg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |
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| T |
5745685 |
tccccattgcagttgcggtggttttcaaggtgatttgtggtgcgtttcttcatcccctatgtgttgtttatgtggccccttttcatgtagtggtgatgcg |
5745784 |
T |
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| Q |
114 |
acgagactatgtctccgcaccaccttctttagcccatctgggtcattttcctgtccgttgttgtgatttccggtccggtgttcatttttattttgctaca |
213 |
Q |
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| T |
5745785 |
acgagactatgtctccgcaccaccttcttcagcccatctgggtcatttttttgtccgttgtcgtgatttccggtccggtgttcatttttattttgctaca |
5745884 |
T |
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| Q |
214 |
ttctgttatagatatgtttccatatgatgatg |
245 |
Q |
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| T |
5745885 |
ttctgttatagatatgtttccttatggtgatg |
5745916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 13033502 - 13033433
Alignment:
| Q |
102 |
agtggtggtgcgacgagactatgtctccgcaccaccttctttag-cccatctgggtcatt-ttcctgtcc |
169 |
Q |
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| T |
13033502 |
agtggtggtacgacgagactaagtctccgcaccaccgtcttcagccccatctgggtcgttgttcctgtcc |
13033433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 245
Target Start/End: Complemental strand, 22189 - 21958
Alignment:
| Q |
14 |
tccccattgcagttgcggtggttttcaaggtgatttctggtgcatttcttcatcccctatgtgttgtttatgtggccccttttcacgcagtggtggtgcg |
113 |
Q |
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| T |
22189 |
tccccattgcagttgcggtggttttcaaggtgatttgtggtgtgtttcttcatcccctatgtgttgtttatgtggccccttttcacacagtggtggtgcg |
22090 |
T |
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| Q |
114 |
acgagactatgtctccgcaccaccttctttagcccatctgggtcattttcctgtccgttgttgtgatttccggtccggtgttcatttttattttgctaca |
213 |
Q |
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||||||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |
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| T |
22089 |
acgagactatgtctctgcaccaccttcttcagctcatctgggtccttttcctgtccgttgtcgtgatttccggtccagtgttcatctttattttgctaca |
21990 |
T |
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| Q |
214 |
ttctgttatagatatgtttccatatgatgatg |
245 |
Q |
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| T |
21989 |
ttctgttatagatatgtttccatatggtgatg |
21958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 824571 - 824529
Alignment:
| Q |
100 |
gcagtggtggtgcgacgagactatgtctccgcaccaccttctt |
142 |
Q |
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| T |
824571 |
gcagtggtggtgcgacgagacttcgtctccgcaccaccttctt |
824529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 7393244 - 7393210
Alignment:
| Q |
103 |
gtggtggtgcgacgagactatgtctccgcaccacc |
137 |
Q |
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| T |
7393244 |
gtggtggtgcgacgagactacgtctccgcaccacc |
7393210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 7872980 - 7873022
Alignment:
| Q |
100 |
gcagtggtggtgcgacgagactatgtctccgcaccaccttctt |
142 |
Q |
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| T |
7872980 |
gcagcggtggtgcgacgagacttcgtctccgcaccaccttctt |
7873022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 21872117 - 21872149
Alignment:
| Q |
103 |
gtggtggtgcgacgagactatgtctccgcacca |
135 |
Q |
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| T |
21872117 |
gtggtggtgcgacgagactacgtctccgcacca |
21872149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 13455289 - 13455253
Alignment:
| Q |
103 |
gtggtggtgcgacgagactatgtctccgcaccacctt |
139 |
Q |
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| T |
13455289 |
gtggtggtgcgacgagactacgtgtccgcaccacctt |
13455253 |
T |
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