View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21557_high_1 (Length: 576)
Name: NF21557_high_1
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21557_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 71 - 567
Target Start/End: Original strand, 11505853 - 11506354
Alignment:
| Q |
71 |
gatggagtttgaggggtagaatatgtggttatttctatgcctttagaatagaattctcagttttgaagtgatttttattagattattttctttcatagnn |
170 |
Q |
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| T |
11505853 |
gatggagtttgaggggtagaatatgtgcttatttctatgcctttagaatagaattctcagttttgaagtgatttttatcagattattttctttcatagtt |
11505952 |
T |
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| Q |
171 |
nnnnnnnnngt-----gtgctatctgctatgaatgtttatctgaatacttcaatatcagttggttgaactttgaaatatgaaattcttgtagtctttttg |
265 |
Q |
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| T |
11505953 |
ttttttttttttttgggtgctatctgctatgaatgtttatctgaatacttcaatatcagttggttgaactttgaaatatgaaattcttgtagtctttttg |
11506052 |
T |
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| Q |
266 |
tagtttgaatgtgtgtgataatttgtgtggaattgaaatcatgagaatttgaattgctaagnnnnnnngaagtgatttttatcagttaattttctttctt |
365 |
Q |
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| T |
11506053 |
tagtttgaatgtgtgtgataatttgtgtggaattgaaatcatgagaatttgaattgctaagtttttttgaagtgatttttatcagttaattttctttctt |
11506152 |
T |
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| Q |
366 |
ggttttctgttcaatgattgtgaatctgaattctttacagttagtggataaagatccaggtaaagcaatttcccttttctgggctgctattaatgctggc |
465 |
Q |
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| T |
11506153 |
ggttttctgttcaatgattgtgaatctgaattctttacagttagtggataaagatccaggtaaagcaatttcccttttctgggctgctattaatgctggc |
11506252 |
T |
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| Q |
466 |
gatcgcgttgagagtgccttgaaggatatggctttagttatgaagcaactgaaccggtctgatgaggcaatcgaagcgatcaagtctttccgccatctct |
565 |
Q |
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| T |
11506253 |
gatcgcgttgagagtgccttgaaggatatggctttagttatgaagcaactgaaccggtctgatgaggcaatcgaagcgatcaagtctttccgtcatctct |
11506352 |
T |
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| Q |
566 |
gc |
567 |
Q |
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| T |
11506353 |
gc |
11506354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 350 - 567
Target Start/End: Original strand, 11498751 - 11498974
Alignment:
| Q |
350 |
gttaattttctttcttggttttctgttcaatgattgtgaatctgaattcttta------cagttagtggataaagatccaggtaaagcaatttccctttt |
443 |
Q |
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||||||||| |||||||||||| |||||||||| ||||||||||||||||||| ||||| | |||||||||| ||||||||||||||||||||| |
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| T |
11498751 |
gttaattttgtttcttggttttttgttcaatgaatgtgaatctgaattctttaattatacagttgatagataaagatctaggtaaagcaatttccctttt |
11498850 |
T |
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| Q |
444 |
ctgggctgctattaatgctggcgatcgcgttgagagtgccttgaaggatatggctttagttatgaagcaactgaaccggtctgatgaggcaatcgaagcg |
543 |
Q |
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| T |
11498851 |
ctggagatccattaatgctggagatcgtgtcgagagtgccttgaaggatatggctttagttatgaagtaattgaaccggtctgacgaggcaatcgaagcg |
11498950 |
T |
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| Q |
544 |
atcaagtctttccgccatctctgc |
567 |
Q |
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|||| ||||||||| || |||||| |
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| T |
11498951 |
atcatgtctttccgtcacctctgc |
11498974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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