View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21557_high_12 (Length: 344)

Name: NF21557_high_12
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21557_high_12
NF21557_high_12
[»] chr8 (4 HSPs)
chr8 (159-275)||(44614666-44614782)
chr8 (14-69)||(44614494-44614549)
chr8 (296-344)||(44614843-44614891)
chr8 (79-118)||(44614585-44614624)
[»] chr4 (18 HSPs)
chr4 (159-275)||(20359317-20359433)
chr4 (159-275)||(9403891-9404007)
chr4 (159-275)||(1994277-1994393)
chr4 (159-275)||(56558805-56558921)
chr4 (162-275)||(30454253-30454366)
chr4 (14-70)||(20359152-20359208)
chr4 (14-69)||(1994110-1994165)
chr4 (14-69)||(56559035-56559090)
chr4 (270-344)||(20359494-20359570)
chr4 (296-344)||(9403782-9403830)
chr4 (296-342)||(1994456-1994502)
chr4 (296-342)||(56558696-56558742)
chr4 (79-118)||(9404049-9404088)
chr4 (79-118)||(20359240-20359279)
chr4 (296-341)||(30454144-30454189)
chr4 (79-118)||(1994198-1994237)
chr4 (79-118)||(56558963-56559002)
chr4 (296-344)||(24807884-24807932)
[»] chr3 (8 HSPs)
chr3 (160-272)||(8961786-8961898)
chr3 (160-275)||(3299630-3299745)
chr3 (1-69)||(8961608-8961674)
chr3 (14-69)||(3299463-3299518)
chr3 (296-342)||(8961955-8962001)
chr3 (296-342)||(3299808-3299854)
chr3 (79-118)||(3299550-3299589)
chr3 (79-118)||(8961707-8961746)
[»] chr7 (5 HSPs)
chr7 (159-275)||(18789308-18789425)
chr7 (159-274)||(22249408-22249523)
chr7 (296-344)||(18789486-18789534)
chr7 (14-69)||(22249241-22249296)
chr7 (79-118)||(22249328-22249367)
[»] scaffold0014 (4 HSPs)
scaffold0014 (163-275)||(8359-8471)
scaffold0014 (296-343)||(8250-8297)
scaffold0014 (14-69)||(8586-8641)
scaffold0014 (79-118)||(8517-8556)
[»] chr2 (3 HSPs)
chr2 (160-275)||(20266417-20266532)
chr2 (296-344)||(20266595-20266643)
chr2 (79-118)||(20266339-20266378)


Alignment Details
Target: chr8 (Bit Score: 109; Significance: 9e-55; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 44614666 - 44614782
Alignment:
Q  159 ccagttaattagtttaaaaatggaagaaattataggaaataaaatttagacaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaa 258  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614666 ccagttaattagtttaaaaatggaagaaattataagaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaa 44614765  T
Q  259 tgaaggaattcattcac 275  Q
    |||||||||||||||||    
T  44614766 tgaaggaattcattcac 44614782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 44614494 - 44614549
Alignment:
Q  14 tgtttaatagaaggaatcattagggaagaaaatatagttattttgtttcaattatt 69  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44614494 tgtttaatagaaggaattattagggaagaaaatatagttattttgtttcaattatt 44614549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 44614891 - 44614843
Alignment:
Q  296 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattct 344  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44614891 gagtgtgtttggatagagcatttgaaaatccaagggaatttgaaattct 44614843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 44614585 - 44614624
Alignment:
Q  79 tgaacgaaatcgagtcaagaaatttaataaattatgatag 118  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  44614585 tgaatgaaatcgagtcaagaaatttaataaattatgatag 44614624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 20359317 - 20359433
Alignment:
Q  159 ccagttaattagtttaaaaatggaagaaattataggaaataaaatttagacaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaa 258  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20359317 ccagttaattagtttaaaaatggaagaaattataagaaataaaatttagacaaataaaggaattcaattactttgtcctccaaacaatgaattttgaaaa 20359416  T
Q  259 tgaaggaattcattcac 275  Q
    |||||||||||||||||    
T  20359417 tgaaggaattcattcac 20359433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 9404007 - 9403891
Alignment:
Q  159 ccagttaattagtttaaaaatggaagaaattataggaaataaaatttagacaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaa 258  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9404007 ccagttaattagtttaaaaatcgaagaaattataagaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaa 9403908  T
Q  259 tgaaggaattcattcac 275  Q
    |||||||||||||||||    
T  9403907 tgaaggaattcattcac 9403891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 1994277 - 1994393
Alignment:
Q  159 ccagttaattagtttaaaaatggaagaaattataggaaataaaatttagacaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaa 258  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1994277 ccagttaattagtttaaaaatggaagtaattataagaaataaaatgtagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaa 1994376  T
Q  259 tgaaggaattcattcac 275  Q
    |||||||||||||||||    
T  1994377 tgaaggaattcattcac 1994393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 56558921 - 56558805
Alignment:
Q  159 ccagttaattagtttaaaaatggaagaaattataggaaataaaatttagacaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaa 258  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56558921 ccagttaattagtttaaaaatggaagtaattataagaaataaaatgtagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaa 56558822  T
Q  259 tgaaggaattcattcac 275  Q
    |||||||||||||||||    
T  56558821 tgaaggaattcattcac 56558805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 162 - 275
Target Start/End: Complemental strand, 30454366 - 30454253
Alignment:
Q  162 gttaattagtttaaaaatggaagaaattataggaaataaaatttagacaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaatga 261  Q
    |||||||||||| |||||||||| ||||||| ||||||||||| |   ||| ||||||||||||||||||||||||| ||||||||| |||  |||||||    
T  30454366 gttaattagttttaaaatggaagtaattataagaaataaaattaaattaaagaaaggaattcaattactttgtcatctaaacaatgattttgaaaaatga 30454267  T
Q  262 aggaattcattcac 275  Q
    ||||||||||||||    
T  30454266 aggaattcattcac 30454253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 20359152 - 20359208
Alignment:
Q  14 tgtttaatagaaggaatcattagggaagaaaatatagttattttgtttcaattattt 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20359152 tgtttaatagaaggaatcattagggaagaaaatatagttattttgtttcaattattt 20359208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 1994110 - 1994165
Alignment:
Q  14 tgtttaatagaaggaatcattagggaagaaaatatagttattttgtttcaattatt 69  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1994110 tgtttaatagaaggaattattagggaagaaaatatagttattttgtttcaattatt 1994165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 56559090 - 56559035
Alignment:
Q  14 tgtttaatagaaggaatcattagggaagaaaatatagttattttgtttcaattatt 69  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  56559090 tgtttaatagaaggaattattagggaagaaaatatagttattttgtttcaattatt 56559035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 20359570 - 20359494
Alignment:
Q  270 attcacatataccaccacctaaccctga--gtgtgtttggatagagcatttgaaaattcaagggaatttgaaattct 344  Q
    ||||||||||||||||||| |||||| |  |||||||||||||||||||||||||||||||||| |||| |||||||    
T  20359570 attcacatataccaccaccaaaccctaaaagtgtgtttggatagagcatttgaaaattcaaggggatttaaaattct 20359494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 9403782 - 9403830
Alignment:
Q  296 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattct 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9403782 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattct 9403830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 1994502 - 1994456
Alignment:
Q  296 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaatt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1994502 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaatt 1994456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 296 - 342
Target Start/End: Original strand, 56558696 - 56558742
Alignment:
Q  296 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaatt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  56558696 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaatt 56558742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 9404088 - 9404049
Alignment:
Q  79 tgaacgaaatcgagtcaagaaatttaataaattatgatag 118  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9404088 tgaacgaaatcgagtcaagaaatttaataaattatgatag 9404049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 20359240 - 20359279
Alignment:
Q  79 tgaacgaaatcgagtcaagaaatttaataaattatgatag 118  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  20359240 tgaacgaaatcgagtcaagaaatttaataaattatgatag 20359279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 30454144 - 30454189
Alignment:
Q  296 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaat 341  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||    
T  30454144 gagtgtgtttggatagaggatttgaaaattcaagagaatttgaaat 30454189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 1994198 - 1994237
Alignment:
Q  79 tgaacgaaatcgagtcaagaaatttaataaattatgatag 118  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  1994198 tgaatgaaatcgagtcaagaaatttaataaattatgatag 1994237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 56559002 - 56558963
Alignment:
Q  79 tgaacgaaatcgagtcaagaaatttaataaattatgatag 118  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  56559002 tgaatgaaatcgagtcaagaaatttaataaattatgatag 56558963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 24807884 - 24807932
Alignment:
Q  296 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattct 344  Q
    |||||||||||||| ||| |||||||||| |||| ||||||||||||||    
T  24807884 gagtgtgtttggatggaggatttgaaaatccaagagaatttgaaattct 24807932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 8961786 - 8961898
Alignment:
Q  160 cagttaattagtttaaaaatggaagaaattataggaaataaaatttagacaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaat 259  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8961786 cagttaattagtttaaaaatggaagaaattataagaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaat 8961885  T
Q  260 gaaggaattcatt 272  Q
    |||||||||||||    
T  8961886 gaaggaattcatt 8961898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 3299630 - 3299745
Alignment:
Q  160 cagttaattagtttaaaaatggaagaaattataggaaataaaatttagacaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaat 259  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299630 cagttaattagtttaaaaatggaagaaattataaaaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaat 3299729  T
Q  260 gaaggaattcattcac 275  Q
    ||||||||||||||||    
T  3299730 gaaggaattcattcac 3299745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 8961608 - 8961674
Alignment:
Q  1 atatgccaaatgttgtttaatagaaggaatcattagggaagaaaatatagttattttgtttcaattatt 69  Q
    ||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8961608 atatgccaaatgtt--ttaatagaaggaattattagggaagaaaatatagttattttgtttcaattatt 8961674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 3299463 - 3299518
Alignment:
Q  14 tgtttaatagaaggaatcattagggaagaaaatatagttattttgtttcaattatt 69  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  3299463 tgtttaatagaaggaattattatggaagaaaatatagttattttgtttcaattatt 3299518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 8962001 - 8961955
Alignment:
Q  296 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaatt 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8962001 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaatt 8961955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 3299854 - 3299808
Alignment:
Q  296 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaatt 342  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  3299854 gagtgtgtttggatagagcatttaaaaatttaagggaatttgaaatt 3299808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 3299550 - 3299589
Alignment:
Q  79 tgaacgaaatcgagtcaagaaatttaataaattatgatag 118  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  3299550 tgaacgaaatcgagtcaaaatatttaataaattatgatag 3299589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 8961707 - 8961746
Alignment:
Q  79 tgaacgaaatcgagtcaagaaatttaataaattatgatag 118  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  8961707 tgaacgaaatcgaggtaagaaatttaataaattatgatag 8961746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 159 - 275
Target Start/End: Original strand, 18789308 - 18789425
Alignment:
Q  159 ccagttaattagtttaaaaatggaagaaattataggaaataaaa-tttagacaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaa 257  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18789308 ccagttaattagtttaaaaatggaagaaattataagaaataaaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaa 18789407  T
Q  258 atgaaggaattcattcac 275  Q
    ||||||||||||||||||    
T  18789408 atgaaggaattcattcac 18789425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 159 - 274
Target Start/End: Original strand, 22249408 - 22249523
Alignment:
Q  159 ccagttaattagtttaaaaatggaagaaattataggaaataaaatttagacaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaa 258  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| ||||| |||||||||||||||||||    
T  22249408 ccagttaattagtttaaaaatggaagaaattataagaaataaaatttagtcaaataaatgaattcaattactttctcatctaaacaatgaattttgaaaa 22249507  T
Q  259 tgaaggaattcattca 274  Q
    ||||||||||||||||    
T  22249508 tgaaggaattcattca 22249523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 18789534 - 18789486
Alignment:
Q  296 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattct 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18789534 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattct 18789486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 22249241 - 22249296
Alignment:
Q  14 tgtttaatagaaggaatcattagggaagaaaatatagttattttgtttcaattatt 69  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  22249241 tgtttaatagaaggaattattaggaaagaaaatatagttattttgtttcaattatt 22249296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 22249328 - 22249367
Alignment:
Q  79 tgaacgaaatcgagtcaagaaatttaataaattatgatag 118  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  22249328 tgaactaaatcgaatcaagaaatttaataaattatgatag 22249367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 163 - 275
Target Start/End: Complemental strand, 8471 - 8359
Alignment:
Q  163 ttaattagtttaaaaatggaagaaattataggaaataaaatttagacaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaatgaa 262  Q
    ||||||||||| |||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8471 ttaattagttttaaaatggaagaaattatcagaaataaaatttagtcaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaatgaa 8372  T
Q  263 ggaattcattcac 275  Q
    |||||||||||||    
T  8371 ggaattcattcac 8359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 296 - 343
Target Start/End: Original strand, 8250 - 8297
Alignment:
Q  296 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattc 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8250 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattc 8297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 8641 - 8586
Alignment:
Q  14 tgtttaatagaaggaatcattagggaagaaaatatagttattttgtttcaattatt 69  Q
    ||||||||||||||||| |||||| || ||||||||||||||||||||||||||||    
T  8641 tgtttaatagaaggaattattaggaaataaaatatagttattttgtttcaattatt 8586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 8556 - 8517
Alignment:
Q  79 tgaacgaaatcgagtcaagaaatttaataaattatgatag 118  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8556 tgaacgaaatcgagtcaagaaatttaataaattatgatag 8517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 20266417 - 20266532
Alignment:
Q  160 cagttaattagtttaaaaatggaagaaattataggaaataaaatttagacaaataaaggaattcaattactttgtcatccaaacaatgaattttgaaaat 259  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||| |||| |||| || ||||||||||| ||||||||||||||||||||||||||    
T  20266417 cagttaattagtttaaaaatggaagaatttataagaaataaaatttagtcaaagaaagaaaatcaattactttatcatccaaacaatgaattttgaaaat 20266516  T
Q  260 gaaggaattcattcac 275  Q
    ||||||||||||||||    
T  20266517 gaaggaattcattcac 20266532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 20266643 - 20266595
Alignment:
Q  296 gagtgtgtttggatagagcatttgaaaattcaagggaatttgaaattct 344  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  20266643 gagtttgtttggatagatgatttgaaaattcaagggaatttgaaattct 20266595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 20266339 - 20266378
Alignment:
Q  79 tgaacgaaatcgagtcaagaaatttaataaattatgatag 118  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  20266339 tgaacgaaatcgagtcaaaaaatttaataaattatgatag 20266378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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