View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21557_high_23 (Length: 233)
Name: NF21557_high_23
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21557_high_23 |
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| [»] scaffold1652 (3 HSPs) |
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| [»] scaffold0902 (2 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold1176 (2 HSPs) |
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Alignment Details
Target: scaffold1652 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 264 - 46
Alignment:
| Q |
1 |
aagcagcaggaggagaagaaatcgtaggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggagaaccaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
264 |
aagcagcaggaggagaagaaatcgtaggcgatggtacttgagatggaggagtagagatcgacgatggagagacagcaggagcagcagcgggagaaccaga |
165 |
T |
|
| Q |
101 |
tgaagcagtcggtgaagaagagggagcactattcacagctaccggaggagacgccactggtgtgtgagcggagggaggaatagcaggtgatggaaacgga |
200 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |
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|
| T |
164 |
tgaagcagtcgttaaagaagagggagcactattcacagttaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacgga |
65 |
T |
|
| Q |
201 |
gaagagttgggtgatgatg |
219 |
Q |
| |
|
||||| ||||||||||||| |
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|
| T |
64 |
gaagacttgggtgatgatg |
46 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 329 - 265
Alignment:
| Q |
17 |
agaaatcgtaggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggag |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
329 |
agaaatcgtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggag |
265 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 407 - 342
Alignment:
| Q |
17 |
agaaatcgtaggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagc |
82 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
407 |
agaaatcgcaggctatggtgcttgagatggaggagtagatatcgacgatggagtcacagcaggagc |
342 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 3546 - 3762
Alignment:
| Q |
2 |
agcagcaggaggagaagaaatcgtaggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggagaaccagat |
101 |
Q |
| |
|
|||||||| |||| | |||| ||||||||||||||||||| |||||| |||| ||||||||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
3546 |
agcagcagagggagtaaaaattgtaggcgatggtgcttgagttggagggatagagatcgacgatggagtgacagcaggagcagcagcgggagaaccagat |
3645 |
T |
|
| Q |
102 |
gaagcagtcggtgaagaagagggagcactattcacagctaccggaggagacgccactggtgtgtgagcggagggaggaatagcaggtgatggaaacggag |
201 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
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|
| T |
3646 |
gaagcagttggtgaagaagagggagcactattcagaggtaccggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggag |
3745 |
T |
|
| Q |
202 |
aagagttgggtgatgat |
218 |
Q |
| |
|
|||| ||||| |||||| |
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|
| T |
3746 |
aagacttgggggatgat |
3762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 3468 - 3532
Alignment:
| Q |
17 |
agaaatcgtaggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggag |
81 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
3468 |
agaaatcgcaggcgttggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggag |
3532 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 165284 - 165079
Alignment:
| Q |
2 |
agcagcaggaggagaagaaatcgtaggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggagaaccagat |
101 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||| ||||||||||||| ||||| ||| | ||||||||||||||||||| ||||||| |
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|
| T |
165284 |
agcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggag------------aaccagag |
165197 |
T |
|
| Q |
102 |
gaagcagtcggtgaagaagagggagcactattcacagctaccggaggagacgccactggtgtgtgagcggagggaggaatagcaggtgatggaaacggag |
201 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| || |||||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
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|
| T |
165196 |
aaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggag |
165097 |
T |
|
| Q |
202 |
aagagttgggtgatgatg |
219 |
Q |
| |
|
|||| | ||| ||||||| |
|
|
| T |
165096 |
aagactggggggatgatg |
165079 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 165347 - 165271
Alignment:
| Q |
17 |
agaaatcgtaggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggag |
93 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||| |||||| |||||| |||||||||||| |||| |||| |
|
|
| T |
165347 |
agaaatcgcaggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagcagcagcaggag |
165271 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 14248442 - 14248647
Alignment:
| Q |
2 |
agcagcaggaggagaagaaatcgtaggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggagaaccagat |
101 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||| ||||||||||||| ||||| ||| | ||||||||||||||||||| ||||||| |
|
|
| T |
14248442 |
agcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggag------------aaccagag |
14248529 |
T |
|
| Q |
102 |
gaagcagtcggtgaagaagagggagcactattcacagctaccggaggagacgccactggtgtgtgagcggagggaggaatagcaggtgatggaaacggag |
201 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| || |||||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14248530 |
aaagcagacggtgaaggagagggagcactattcagaggtaccggagaagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggag |
14248629 |
T |
|
| Q |
202 |
aagagttgggtgatgatg |
219 |
Q |
| |
|
|||| | ||| ||||||| |
|
|
| T |
14248630 |
aagactggggggatgatg |
14248647 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 14317004 - 14317164
Alignment:
| Q |
2 |
agcagcaggaggagaagaaatcgtaggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggagaaccagat |
101 |
Q |
| |
|
|||||||| || || |||||| |||||||||||| |||||||||| || ||||| ||| | |||||||||||| ||||||| |||| ||||||||||| |
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|
| T |
14317004 |
agcagcagcagaaggagaaatagtaggcgatggtccttgagatggtggggtagagatccatgatggagcgacaacaggagctgcagcaggagaaccagag |
14317103 |
T |
|
| Q |
102 |
gaagcagtcggtgaagaagagggagcactattcacagctaccggaggagacgccactggtg |
162 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
14317104 |
gaagcagacggtgaaggagagggagcactattcagaggtaccggaggagacgccactggtg |
14317164 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 14351646 - 14351736
Alignment:
| Q |
17 |
agaaatcgtaggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggagaaccagatgaagca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | || ||||||| ||||||||||| |||||||||||||| | |||||| |
|
|
| T |
14351646 |
agaaatcgtaggcgatggtgcttgagatggtggagtagagactgatgatggagtaacagcaggagcgacagcgggagaaccaaaggaagca |
14351736 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 14248379 - 14248455
Alignment:
| Q |
17 |
agaaatcgtaggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggag |
93 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||| |||||| |||||| |||||||||||| |||| |||| |
|
|
| T |
14248379 |
agaaatcgcaggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagcagcagcaggag |
14248455 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 14316942 - 14317012
Alignment:
| Q |
18 |
gaaatcgtaggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagc |
88 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||||||||| ||||| ||||||| ||| |||||||| |||| |
|
|
| T |
14316942 |
gaaatcgcaggcgagggtgcttgagacggaggagtagagatcgatgatggagtcacatcaggagcagcagc |
14317012 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 14317161 - 14317194
Alignment:
| Q |
186 |
ggtgatggaaacggagaagagttgggtgatgatg |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
14317161 |
ggtgatggaaacggagaagacttgggtgatgatg |
14317194 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 188 - 112
Alignment:
| Q |
17 |
agaaatcgtaggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggag |
93 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| |||| |||| |
|
|
| T |
188 |
agaaatcgcaggcgatggtgcttgagatggaggagtagagatcgatgatggagtcacagcaggagcagcagcaggag |
112 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 125 - 45
Alignment:
| Q |
2 |
agcagcaggaggagaagaaatcgtaggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagc |
82 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||| ||||||||||||| ||||| ||| | |||||| ||||| ||||||| |
|
|
| T |
125 |
agcagcagcaggaggagaaatagtaggcgatggtccttgagatggaggggtagagatccaggatggatcgacaacaggagc |
45 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 37245116 - 37245194
Alignment:
| Q |
17 |
agaaatcgtaggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagcatcagcgggagaa |
95 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||||| || |||||||| |
|
|
| T |
37245116 |
agaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggcaacgggagaa |
37245194 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 37242102 - 37242164
Alignment:
| Q |
20 |
aatcgtaggcgatggtgcttgagatggaggagtagatatcgacgatggagcgacagcaggagc |
82 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| || |||||| |||||| || |||||||| |
|
|
| T |
37242102 |
aatcgcaggtgatggtgcttgagatggaggagttgagatcgacaatggagtaactgcaggagc |
37242164 |
T |
|
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