View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21557_high_24 (Length: 219)

Name: NF21557_high_24
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21557_high_24
NF21557_high_24
[»] chr7 (13 HSPs)
chr7 (37-188)||(1604407-1604558)
chr7 (27-202)||(2321203-2321378)
chr7 (27-188)||(1088661-1088822)
chr7 (27-188)||(1106010-1106171)
chr7 (27-188)||(1596067-1596228)
chr7 (27-188)||(1541458-1541619)
chr7 (27-188)||(1557402-1557563)
chr7 (27-188)||(1550692-1550853)
chr7 (37-202)||(2337610-2337775)
chr7 (27-202)||(2329701-2329876)
chr7 (37-188)||(3955450-3955601)
chr7 (19-187)||(9532045-9532212)
chr7 (27-187)||(30792316-30792477)
[»] scaffold0491 (2 HSPs)
scaffold0491 (27-154)||(1142-1269)
scaffold0491 (37-187)||(5996-6146)
[»] chr8 (4 HSPs)
chr8 (27-154)||(18739263-18739390)
chr8 (27-154)||(18744227-18744354)
chr8 (37-187)||(18749155-18749305)
chr8 (37-187)||(18723503-18723653)
[»] chr1 (2 HSPs)
chr1 (53-187)||(19250444-19250577)
chr1 (40-139)||(41668832-41668931)
[»] chr3 (1 HSPs)
chr3 (27-151)||(31658032-31658156)
[»] chr4 (3 HSPs)
chr4 (27-139)||(42977758-42977870)
chr4 (53-139)||(48712417-48712503)
chr4 (63-139)||(54122969-54123045)
[»] chr5 (3 HSPs)
chr5 (27-139)||(36620620-36620732)
chr5 (40-139)||(8873078-8873178)
chr5 (27-139)||(39102272-39102384)
[»] chr6 (1 HSPs)
chr6 (27-139)||(1257826-1257938)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 1604407 - 1604558
Alignment:
Q  37 cagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgtt 136  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  1604407 cagaaataaagcaccgacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgtt 1604506  T
Q  137 ctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaagg 188  Q
    ||||||||| |||||||| || |||||| | |||||||| | ||||||||||    
T  1604507 ctctgtcttgtatgatgatgtagaagccgtggaattcaagtggagaaaaagg 1604558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 2321203 - 2321378
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||||||| ||    
T  2321203 agaatattatcagaaataaagcaccgaaatattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctaccattacatggagagag 2321302  T
Q  127 gaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaaggctaaatgttgttaa 202  Q
    ||||||||||||| ||||| |||||||| |  || ||||| |||||||||| |||||||||||| |||||||||||    
T  2321303 gaagtttgttctccgtcttgtatgatgatgcagaggccatggaattcaattggagaaaaaggcttaatgttgttaa 2321378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 27 - 188
Target Start/End: Original strand, 1088661 - 1088822
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1088661 agaatattatcagaaataaagcacaaacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaag 1088760  T
Q  127 gaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaagg 188  Q
    |||| |||||||||||||| |||||||| || |||||  | |||||||||| ||||||||||    
T  1088761 gaagcttgttctctgtcttgtatgatgatgtagaagctgtggaattcaattggagaaaaagg 1088822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 27 - 188
Target Start/End: Original strand, 1106010 - 1106171
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  1106010 agaatattatcagaaataaagcaccgacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaag 1106109  T
Q  127 gaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaagg 188  Q
    ||||  |||||||| |||| |||||||| || |||||| | |||||||||| ||||| ||||    
T  1106110 gaagcctgttctctatcttgtatgatgatgtagaagccgtggaattcaattggagaacaagg 1106171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 27 - 188
Target Start/End: Original strand, 1596067 - 1596228
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  1596067 agaatattatcagaaataaagcaccgacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaag 1596166  T
Q  127 gaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaagg 188  Q
    ||||  ||||||||||||| |||||||| || |||||| | |||||||| | ||||| ||||    
T  1596167 gaagcctgttctctgtcttgtatgatgatgtagaagccgtggaattcaagtggagaacaagg 1596228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 188
Target Start/End: Complemental strand, 1541619 - 1541458
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  1541619 agaatattatcagaaataaagcaccgacatattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagag 1541520  T
Q  127 gaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaagg 188  Q
    |||| || ||||||||||| |||||||| || |||||| | |||||||| | ||| ||||||    
T  1541519 gaagcttattctctgtcttgtatgatgatgtagaagccgtggaattcaagtggaggaaaagg 1541458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 188
Target Start/End: Complemental strand, 1557563 - 1557402
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  ||||||||||||||  | |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  1557563 agaatattatcagaaataaagcacaaacatatcgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatatatcaatacatggagaaag 1557464  T
Q  127 gaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaagg 188  Q
    |||| |||||||||||||| |||||||| || |||||  | |||||||||| ||||||||||    
T  1557463 gaagcttgttctctgtcttgtatgatgatgtggaagctgtggaattcaattggagaaaaagg 1557402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 27 - 188
Target Start/End: Complemental strand, 1550853 - 1550692
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||||| ||    
T  1550853 agaatattgacagaaataaagcaccgacatattgtgaagcttcatggattctgcttgcacaagagaatcatgtttttgatctatcagtacatggagagag 1550754  T
Q  127 gaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaagg 188  Q
    |||| |||||| ||||||| ||||| || || |||||  | |||||||||| ||||||||||    
T  1550753 gaagcttgttcactgtcttgtatgacgatgtagaagctgtggaattcaattggagaaaaagg 1550692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 2337610 - 2337775
Alignment:
Q  37 cagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgtt 136  Q
    |||| |||||||||||| |||| ||||||||||||||||||||  | |||| |||||||||||||||||||||  | || ||||||||||| || |||||    
T  2337610 cagatataaagcaccgacatatcgtgaagctttatggattctgtctccacagaagaatcatgtttttgatctacgagtacatggagaaaggtagcttgtt 2337709  T
Q  137 ctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaaggctaaatgttgttaa 202  Q
    ||||| ||| |||||||||||||||||| | |||||||||| |||||||||| | |||||| ||||    
T  2337710 ctctggcttgtatgatgaagttgaagccgtggaattcaattggagaaaaagggttaatgttattaa 2337775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 2329701 - 2329876
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  |||| |||||||||||  |||| ||||||||||||||||||||  | |||| |||||||||||||||||||||  | || ||||||||||    
T  2329701 agaatattatcagatataaagcaccggcatatcgtgaagctttatggattctgtctccacagaagaatcatgtttttgatctacgagtacatggagaaag 2329800  T
Q  127 gaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaaggctaaatgttgttaa 202  Q
    | || |||||||||||||| |||||||||| ||||||| | |||||||||| |||||||||| | |||||| ||||    
T  2329801 gtagcttgttctctgtcttgtatgatgaaggtgaagccgtggaattcaattggagaaaaagggttaatgttattaa 2329876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 3955601 - 3955450
Alignment:
Q  37 cagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgtt 136  Q
    |||||||||||||| ||||||||||||||||||||||||| || ||||| |||||| | ||||||||||||||||| |||||||| |||||||| |||||    
T  3955601 cagaaataaagcacagaaatattgtgaagctttatggattttgtttgcataaaagagttatgtttttgatctatcagtatatggaaaaaggaagcttgtt 3955502  T
Q  137 ctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaagg 188  Q
    ||| |||||  ||||||| || ||||||||  ||||| ||| ||| ||||||    
T  3955501 ctccgtcttgcatgatgatgtcgaagccataaaattcgattggaggaaaagg 3955450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 9532212 - 9532045
Alignment:
Q  19 atgaagcaagaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatat 118  Q
    ||||||| ||||||||   | ||||||| |||  ||||||||| |||||||||||||| || ||| |||||||||||||||||||||||||||||||  |    
T  9532212 atgaagcgagaatattataaaaaataaatcacataaatattgttaagctttatggattatgattgtacaaaagaatcatgtttttgatctatcaatacgt 9532113  T
Q  119 ggagaaaggaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaag 187  Q
     ||||||||||||||||||||  | || |||||||| || ||||   | |||||||||| |||||||||    
T  9532112 -gagaaaggaagtttgttctcgtttttgtatgatgatgtagaagttgtggaattcaattggagaaaaag 9532045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 187
Target Start/End: Original strand, 30792316 - 30792477
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcac-aaaagaatcatgtttttgatctatcaatatatggagaaa 125  Q
    ||||||||  || |||||||||||  ||||||||| ||||||||| |||||||||||||| ||||||||| |||||||||||||||||||  | ||||||    
T  30792316 agaatattatcataaataaagcacataaatattgttaagctttatagattctgcttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaa 30792415  T
Q  126 ggaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaag 187  Q
     |||| | ||||| ||| || |||||||| || ||||   |  ||||||||| |||||||||    
T  30792416 agaagctagttctttgttttgtatgatgatgtagaagttgtgaaattcaattggagaaaaag 30792477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 1269 - 1142
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1269 agaatattatcagaaataaagcaccgacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaag 1170  T
Q  127 gaagtttgttctctgtcttatatgatga 154  Q
    |||| |||||||||||||| ||||||||    
T  1169 gaagcttgttctctgtcttgtatgatga 1142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 6146 - 5996
Alignment:
Q  37 cagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgtt 136  Q
    ||||||||||||||  | |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| || ||    
T  6146 cagaaataaagcacaaacatatcgtgaagctttatggtttctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttatt 6047  T
Q  137 ctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaag 187  Q
    ||||||||| |||||||| || |||||| |  ||||||| | |||||||||    
T  6046 ctctgtcttgtatgatgatgtagaagccctgcaattcaagtggagaaaaag 5996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 18739390 - 18739263
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18739390 agaatattatcagaaataaagcaccgacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaag 18739291  T
Q  127 gaagtttgttctctgtcttatatgatga 154  Q
    |||| |||||||||||||| ||||||||    
T  18739290 gaagcttgttctctgtcttgtatgatga 18739263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 18744354 - 18744227
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18744354 agaatattatcagaaataaagcaccgacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaag 18744255  T
Q  127 gaagtttgttctctgtcttatatgatga 154  Q
    |||| |||||||||||||| ||||||||    
T  18744254 gaagcttgttctctgtcttgtatgatga 18744227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 18749305 - 18749155
Alignment:
Q  37 cagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgtt 136  Q
    ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| || ||    
T  18749305 cagaaataaagcacaaacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttatt 18749206  T
Q  137 ctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaag 187  Q
    ||||||||| |||||||| || |||||||| |||||||| | |||||||||    
T  18749205 ctctgtcttgtatgatgatgtagaagccatggaattcaagtggagaaaaag 18749155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 18723653 - 18723503
Alignment:
Q  37 cagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgtt 136  Q
    ||||||||||||||  | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| || ||    
T  18723653 cagaaataaagcacaaacatatagtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttatt 18723554  T
Q  137 ctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaag 187  Q
    ||||||||| |||||||| || ||||||||  ||||||| | |||||||||    
T  18723553 ctctgtcttgtatgatgatgtagaagccatgaaattcaagtggagaaaaag 18723503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 53 - 187
Target Start/End: Original strand, 19250444 - 19250577
Alignment:
Q  53 aaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgttctctgtcttatatgat 152  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |||| |||||||| || || ||||||    
T  19250444 aaatattgttaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacat-gaaaaatgaagcttgttctcggttttgtatgat 19250542  T
Q  153 gaagttgaagccatcgaattcaattcgagaaaaag 187  Q
    || || ||||   | |||||||||| |||||||||    
T  19250543 gatgtagaagttgtggaattcaattggagaaaaag 19250577  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 41668931 - 41668832
Alignment:
Q  40 aaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgttctc 139  Q
    ||||||||||   ||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||| ||| ||| | |||| ||||||||||||    
T  41668931 aaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaataatgtttttaatctatcgatacatgaaaaaagaaagtttgttctc 41668832  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 31658032 - 31658156
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  || ||||||||||   ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| | ||||    
T  31658032 agaatattatcaaaaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaag 31658131  T
Q  127 gaagtttgttctctgtcttatatga 151  Q
     |||||||||||| || ||||||||    
T  31658132 aaagtttgttctcggttttatatga 31658156  T

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Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 42977870 - 42977758
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  || ||||||||||   ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| | ||||    
T  42977870 agaatattatcaaaaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaag 42977771  T
Q  127 gaagtttgttctc 139  Q
     ||||||||||||    
T  42977770 aaagtttgttctc 42977758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 48712503 - 48712417
Alignment:
Q  53 aaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgttctc 139  Q
    ||||||||| |||||||||||||| |||||||||||||||||||| ||||  ||||||||||| ||| | |||| ||||||||||||    
T  48712503 aaatattgttaagctttatggattttgcttgcacaaaagaatcatattttcaatctatcaatacatgaaaaaagaaagtttgttctc 48712417  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 54122969 - 54123045
Alignment:
Q  63 aagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgttctc 139  Q
    |||||||||  ||| |||||||||||||||||||||||||| ||||||||||| ||| | |||| ||||||||||||    
T  54122969 aagctttatatattttgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctc 54123045  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 36620620 - 36620732
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  || ||||||||||   ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| | | ||    
T  36620620 agaatattatcaaaaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaagag 36620719  T
Q  127 gaagtttgttctc 139  Q
     ||||||||||||    
T  36620720 aaagtttgttctc 36620732  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 8873178 - 8873078
Alignment:
Q  40 aaataaagcaccgaaatattgtgaagctttatggattct-gcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgttct 138  Q
    ||||||||||   ||||||| | |||||||||||||| | ||||||||||||||||||||||||| ||||||||||| ||| | |||| |||||||||||    
T  8873178 aaataaagcagataaatattattaagctttatggatttttgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttct 8873079  T
Q  139 c 139  Q
    |    
T  8873078 c 8873078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 39102384 - 39102272
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  || ||||||||||   ||||||||| |||||||||||||| |||||||||||||||| ||||||||| || |||||||| ||| | | ||    
T  39102384 agaatattatcaaaaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaagcatgtttttaatatatcaatacatgaaaagag 39102285  T
Q  127 gaagtttgttctc 139  Q
     ||||||||||||    
T  39102284 aaagtttgttctc 39102272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 1257826 - 1257938
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  || ||||||||||   ||||||||| || ||||||| ||| || ||||||||||||||||||||||| ||||||||||| ||| | ||||    
T  1257826 agaatattatcaaaaataaagcagataaatattgttaaactttatgaattttgtttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaag 1257925  T
Q  127 gaagtttgttctc 139  Q
     ||||||||||||    
T  1257926 aaagtttgttctc 1257938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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