View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21557_high_26 (Length: 209)
Name: NF21557_high_26
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21557_high_26 |
 | |
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| [»] scaffold0491 (2 HSPs) |
| |
|
| [»] chr8 (5 HSPs) |
| |
|
| [»] chr7 (13 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
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Alignment Details
Target: scaffold0491 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 1427 - 1219
Alignment:
| Q |
1 |
caacagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaa |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1427 |
caacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaagaa |
1328 |
T |
|
| Q |
101 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1327 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
1228 |
T |
|
| Q |
201 |
tatggattc |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
1227 |
tatggattc |
1219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 3 - 205
Target Start/End: Complemental strand, 6312 - 6110
Alignment:
| Q |
3 |
acagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaaac |
102 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6312 |
acagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaagaaac |
6213 |
T |
|
| Q |
103 |
ttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagcttta |
202 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||| |||||| ||||||||||| |
|
|
| T |
6212 |
ttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaacatatcgtgaagcttta |
6113 |
T |
|
| Q |
203 |
tgg |
205 |
Q |
| |
|
||| |
|
|
| T |
6112 |
tgg |
6110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 18739548 - 18739340
Alignment:
| Q |
1 |
caacagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaa |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18739548 |
caacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaagaa |
18739449 |
T |
|
| Q |
101 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18739448 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
18739349 |
T |
|
| Q |
201 |
tatggattc |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
18739348 |
tatggattc |
18739340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 18744512 - 18744304
Alignment:
| Q |
1 |
caacagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaa |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18744512 |
caacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaagaa |
18744413 |
T |
|
| Q |
101 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18744412 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
18744313 |
T |
|
| Q |
201 |
tatggattc |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
18744312 |
tatggattc |
18744304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 18749471 - 18749265
Alignment:
| Q |
3 |
acagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaaac |
102 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18749471 |
acagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaagaaac |
18749372 |
T |
|
| Q |
103 |
ttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagcttta |
202 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
18749371 |
ttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaacatattgtgaagcttta |
18749272 |
T |
|
| Q |
203 |
tggattc |
209 |
Q |
| |
|
||||||| |
|
|
| T |
18749271 |
tggattc |
18749265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 18723819 - 18723613
Alignment:
| Q |
3 |
acagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaaac |
102 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18723819 |
acagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaagaaac |
18723720 |
T |
|
| Q |
103 |
ttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagcttta |
202 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||| |||||| ||||||||||| |
|
|
| T |
18723719 |
ttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaacatatagtgaagcttta |
18723620 |
T |
|
| Q |
203 |
tggattc |
209 |
Q |
| |
|
||||||| |
|
|
| T |
18723619 |
tggattc |
18723613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 18733045 - 18732996
Alignment:
| Q |
130 |
cttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaag |
179 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18733045 |
cttttgattagagttttagaaatgaagtgagaatattatcagaaataaag |
18732996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 1595909 - 1596117
Alignment:
| Q |
1 |
caacagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaa |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1595909 |
caacagaagactttgacatgagatattgcattggaacgggagcatatggaagtgtttacagggcacaattaccaagtggaaaggttgttgccttaaagaa |
1596008 |
T |
|
| Q |
101 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
200 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1596009 |
acttcacggctatgaagccgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
1596108 |
T |
|
| Q |
201 |
tatggattc |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
1596109 |
tatggattc |
1596117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 1541777 - 1541570
Alignment:
| Q |
1 |
caacagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaa |
100 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
1541777 |
caacagaagacttcgacatgagatattgcattggaaccggagcatatggaagtgtttacaaggcacaattaccatgtggaaaggttgttgccttaaagaa |
1541678 |
T |
|
| Q |
101 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
200 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1541677 |
acttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
1541578 |
T |
|
| Q |
201 |
tatggatt |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
1541577 |
tatggatt |
1541570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 1105852 - 1106060
Alignment:
| Q |
1 |
caacagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaa |
100 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1105852 |
caacggaagactttgacatgagatattgcattggaactggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaagaa |
1105951 |
T |
|
| Q |
101 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
200 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1105952 |
acttcacggctatgaagtcgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
1106051 |
T |
|
| Q |
201 |
tatggattc |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
1106052 |
tatggattc |
1106060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 1604239 - 1604447
Alignment:
| Q |
1 |
caacagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaa |
100 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1604239 |
caacggaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaagaa |
1604338 |
T |
|
| Q |
101 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
200 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1604339 |
acttcacggctatgaagaagaggttccatcttttgatgagagtttcaaaaatgaagtgaaaatattatcagaaataaagcaccgacatattgtgaagctt |
1604438 |
T |
|
| Q |
201 |
tatggattc |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
1604439 |
tatggattc |
1604447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 1088503 - 1088711
Alignment:
| Q |
1 |
caacagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaa |
100 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1088503 |
caacagaggactttgacatgagatattgcattggaacaggagcatatagaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaagaa |
1088602 |
T |
|
| Q |
101 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
200 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1088603 |
acttcacggctatgaagccgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcacaaacatattgtgaagctt |
1088702 |
T |
|
| Q |
201 |
tatggattc |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
1088703 |
tatggattc |
1088711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 1557721 - 1557513
Alignment:
| Q |
1 |
caacagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
1557721 |
caacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggtaatgttgttgctttaaagaa |
1557622 |
T |
|
| Q |
101 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
200 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
1557621 |
acttcacggctatgaagctgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcacaaacatatcgtgaagctt |
1557522 |
T |
|
| Q |
201 |
tatggattc |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
1557521 |
tatggattc |
1557513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 1551011 - 1550803
Alignment:
| Q |
1 |
caacagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaa |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |
|
|
| T |
1551011 |
caacagaagactttgacatgagatattgcattggaaccggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttgtcgccttaaagaa |
1550912 |
T |
|
| Q |
101 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
200 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1550911 |
acttcatggctatgaagcagacgttccatcttttgatgagagtttcagaaatgaagtgagaatattgacagaaataaagcaccgacatattgtgaagctt |
1550812 |
T |
|
| Q |
201 |
tatggattc |
209 |
Q |
| |
|
|||||||| |
|
|
| T |
1550811 |
catggattc |
1550803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 2329543 - 2329751
Alignment:
| Q |
1 |
caacagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaa |
100 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| ||||||| |
|
|
| T |
2329543 |
caacagaagactttgacattagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggaaaagttgttgcaataaagaa |
2329642 |
T |
|
| Q |
101 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
2329643 |
acttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagatataaagcaccggcatatcgtgaagctt |
2329742 |
T |
|
| Q |
201 |
tatggattc |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
2329743 |
tatggattc |
2329751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 2337442 - 2337650
Alignment:
| Q |
1 |
caacagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaa |
100 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| || |||||||| ||||||| |
|
|
| T |
2337442 |
caacagaagactttgacattagatattgcattgggacaggagcatatggaagtgtttataaggcacaattaccatgtggaaaagttgttgcaataaagaa |
2337541 |
T |
|
| Q |
101 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
2337542 |
acttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgaaaatattatcagatataaagcaccgacatatcgtgaagctt |
2337641 |
T |
|
| Q |
201 |
tatggattc |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
2337642 |
tatggattc |
2337650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 2321045 - 2321252
Alignment:
| Q |
1 |
caacagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaa |
100 |
Q |
| |
|
|||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| ||||| |
|
|
| T |
2321045 |
caacggaagattttgacattagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggaaaagttgttgccttgaagaa |
2321144 |
T |
|
| Q |
101 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
200 |
Q |
| |
|
||||||| |||||||||||||| | ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2321145 |
acttcacggctatgaagcagagctgccagcttttgatgaaagttttagaaatgaagtgagaatattatcagaaataaagcaccgaaatattgtgaagctt |
2321244 |
T |
|
| Q |
201 |
tatggatt |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
2321245 |
tatggatt |
2321252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 3955769 - 3955562
Alignment:
| Q |
1 |
caacagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaa |
100 |
Q |
| |
|
||||| |||||||||| || | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || |
|
|
| T |
3955769 |
caacaaaagactttgacattaaatattgcattggaaaaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaatttgttgcactaaaaaa |
3955670 |
T |
|
| Q |
101 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
200 |
Q |
| |
|
|||||| |||| ||||||||||| |||||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
3955669 |
acttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaatattgtgaagctt |
3955570 |
T |
|
| Q |
201 |
tatggatt |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
3955569 |
tatggatt |
3955562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 9532353 - 9532155
Alignment:
| Q |
10 |
actttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaaacttcaccg |
109 |
Q |
| |
|
||||||| || ||||||||||| | |||||||||||||||||||| |||||| | ||||||||| ||| || ||||| |||||||||||||||||| |
|
|
| T |
9532353 |
actttgacattagatattgcatatggacaggagcatatggaagtgtatacaagactcaattaccatgtgacaaagttgtcgccttaaagaaacttcacat |
9532254 |
T |
|
| Q |
110 |
ctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggatt |
208 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||| | ||||||| ||| | ||||||| |||||||||||||| |
|
|
| T |
9532253 |
ctatgaagcagaggtgccatcttttgatgcgagtttcaaaaatgaagcgagaatattataaaaaataaatcacataaatattgttaagctttatggatt |
9532155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 30792158 - 30792366
Alignment:
| Q |
1 |
caacagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaa |
100 |
Q |
| |
|
||||| || ||||||| || ||||||| ||| | ||| ||| | ||| |||||| |||||| | || ||| || |||| || |||||||||||| |||| |
|
|
| T |
30792158 |
caacataacactttgacattagatattacatcgagacatgaggacatgaaagtgtatacaagactcatttatcatgtggcaaagttgttgccttatagaa |
30792257 |
T |
|
| Q |
101 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
200 |
Q |
| |
|
||||||| ||||||| || | || ||||||||| | ||||||| |||||||||||||||||||||| ||||||||||| | ||||||| |||||| |
|
|
| T |
30792258 |
acttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaagcacataaatattgttaagctt |
30792357 |
T |
|
| Q |
201 |
tatggattc |
209 |
Q |
| |
|
||| ||||| |
|
|
| T |
30792358 |
tatagattc |
30792366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 19250260 - 19250468
Alignment:
| Q |
1 |
caacagaagactttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaa |
100 |
Q |
| |
|
||||| || ||||||| || ||||||||||| |||||| |||||| |||||| |||||| | | ||||||| ||||||| ||||| || |||||||| |
|
|
| T |
19250260 |
caacacaacactttgacattagatattgcatcatgacaggatcatatgaaagtgtatacaagactcgattaccatgtggtaaagttgtcgctttaaagaa |
19250359 |
T |
|
| Q |
101 |
acttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctt |
200 |
Q |
| |
|
| ||||| |||||||| ||| || || |||||||||| |||||||||| ||||||||||||||||||| | ||||| ||| | ||||||| |||||| |
|
|
| T |
19250360 |
atttcacaactatgaagtagatgtgccgtcttttgatgcgagtttcagaattgaagtgagaatattatcatatataaaacacataaatattgttaagctt |
19250459 |
T |
|
| Q |
201 |
tatggattc |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
19250460 |
tatggattc |
19250468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 41669093 - 41668895
Alignment:
| Q |
10 |
actttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaaacttcaccg |
109 |
Q |
| |
|
||||||| || ||||||||||| | ||| ||||||||||||||| |||||| | |||||| || |||| || ||| ||||||||||||||||| |
|
|
| T |
41669093 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
41668994 |
T |
|
| Q |
110 |
ctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggatt |
208 |
Q |
| |
|
|||||||||||| || |||||||||||| |||||||||| |||||||| |||||||| | |||||||||| | ||||||| |||||||||||||| |
|
|
| T |
41668993 |
ctatgaagcagatgtgtcatcttttgatgtgagtttcagaattgaagtgaaaatattataaaaaataaagcagataaatattgttaagctttatggatt |
41668895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 42978019 - 42977821
Alignment:
| Q |
10 |
actttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaaacttcaccg |
109 |
Q |
| |
|
||||||| || ||||||||||| | ||| ||||||||||||||| |||||| | |||||| || |||| || ||| ||||||||||||||||| |
|
|
| T |
42978019 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
42977920 |
T |
|
| Q |
110 |
ctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggatt |
208 |
Q |
| |
|
|||||||||||| || |||||||||||| | |||||||| ||||||||||||||||||| |||||||||| | ||||||| |||||||||||||| |
|
|
| T |
42977919 |
ctatgaagcagatgtgtcatcttttgatgcgaatttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggatt |
42977821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 16880158 - 16880331
Alignment:
| Q |
10 |
actttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaaacttcaccg |
109 |
Q |
| |
|
||||||| || ||||||||||| || ||| |||||||||||||||| |||||| | | ||||||| | | || |||| |||||||||||| ||||| |
|
|
| T |
16880158 |
actttgacattagatattgcatcggcacaagagcatatggaagtgtatacaagactcgattaccatcttgcaaagttgccgccttaaagaaatttcacaa |
16880257 |
T |
|
| Q |
110 |
ctatgaagcagaggttccatcttttgatgatagtttcagaaatgaa-gtgagaatattatcagaaataaagcac |
182 |
Q |
| |
|
|||||||| | | || |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16880258 |
ctatgaagtaaaagtgtcatcttttgatgcgagtttcagaaatgaatgtgagaatattatcagaaataaagcac |
16880331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 54122784 - 54122955
Alignment:
| Q |
10 |
actttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaaacttcaccg |
109 |
Q |
| |
|
||||||| || ||||||||||| | ||| ||||||||||||||| |||||| | |||||| || |||| || ||| ||||||||||||||||| |
|
|
| T |
54122784 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
54122883 |
T |
|
| Q |
110 |
ctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagca |
181 |
Q |
| |
|
|||||||||||| || |||||||||||| ||||||| || ||||||||||||||||| | |||||||||| |
|
|
| T |
54122884 |
ctatgaagcagatgtgtcatcttttgatgtgagtttcacaattgaagtgagaatattataaaaaataaagca |
54122955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 48712677 - 48712480
Alignment:
| Q |
10 |
actttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaaacttcaccg |
109 |
Q |
| |
|
||||||| || ||||||||||| | ||| ||||||||||||||| |||||| | |||||| || |||| || ||| ||||||||||||||||| |
|
|
| T |
48712677 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
48712578 |
T |
|
| Q |
110 |
ctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggatt |
208 |
Q |
| |
|
|||| ||||||| || | |||||||||| | |||||||| ||||||||||||||||||| ||||||| || | ||||||| |||||||||||||| |
|
|
| T |
48712577 |
ctattaagcagatgtgtcttcttttgatgcgattttcagaattgaagtgagaatattatcaaaaataaa-cagataaatattgttaagctttatggatt |
48712480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 8873340 - 8873142
Alignment:
| Q |
10 |
actttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaaacttcaccg |
109 |
Q |
| |
|
||||||| || ||||||||||| | ||| ||||||||||||||| |||||| | |||||| || |||| || ||| ||||||||||||||||| |
|
|
| T |
8873340 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgcgaccttaaagaaacttcacaa |
8873241 |
T |
|
| Q |
110 |
ctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggatt |
208 |
Q |
| |
|
|||||||||||| || |||| ||||||| |||||||||| ||||||||||||||||| | |||||||||| | ||||| | |||||||||||||| |
|
|
| T |
8873240 |
ctatgaagcagatgtgtcatcgtttgatgccagtttcagaattgaagtgagaatattataaaaaataaagcagataaatattattaagctttatggatt |
8873142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 41 - 208
Target Start/End: Original strand, 36620505 - 36620669
Alignment:
| Q |
41 |
agcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgat |
140 |
Q |
| |
|
||||||||||||| | |||||| | |||||| || |||| || ||| ||||||||||||||||| |||| ||||||| || ||||||||||| |
|
|
| T |
36620505 |
agcatatggaagtttatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaactattaagcagatgt---atcttttgatgcg |
36620601 |
T |
|
| Q |
141 |
agtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggatt |
208 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||| | ||||||| |||||||||||||| |
|
|
| T |
36620602 |
agtttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggatt |
36620669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 208
Target Start/End: Complemental strand, 39102501 - 39102335
Alignment:
| Q |
41 |
agcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgat |
140 |
Q |
| |
|
||||||||||||| | |||||| | |||||| || |||| || ||| |||||||||| |||||| |||| ||||||| || |||||||||||| |
|
|
| T |
39102501 |
agcatatggaagtttatacaagactcaattatcatgtggcaaatttgcctccttaaagaa-cttcacaactattaagcagatgtgtcatcttttgatgcg |
39102403 |
T |
|
| Q |
141 |
agtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggatt |
208 |
Q |
| |
|
||||| |||| ||||||||||||||||||| |||||||||| | ||||||| |||||||||||||| |
|
|
| T |
39102402 |
agttttagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggatt |
39102335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 10 - 208
Target Start/End: Original strand, 31657883 - 31658081
Alignment:
| Q |
10 |
actttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaaacttcaccg |
109 |
Q |
| |
|
||||||| || ||||||||||| | ||| |||| |||||||||| |||||| | |||||| || |||| || |||| ||||||||||||||||| |
|
|
| T |
31657883 |
actttgacattagatattgcatcgtgacataagcacatggaagtgtatacaagactcaattatcatgtggcaaatttgtcaccttaaagaaacttcacaa |
31657982 |
T |
|
| Q |
110 |
ctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggatt |
208 |
Q |
| |
|
||| ||| ||| || |||||||||||| | |||||||| ||||||||||||||||||| |||||||||| | ||||||| |||||||||||||| |
|
|
| T |
31657983 |
ctacgaaatagatgtgtcatcttttgatgcgaatttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggatt |
31658081 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 1257677 - 1257848
Alignment:
| Q |
10 |
actttgaaatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaggttgttgccttaaagaaacttcaccg |
109 |
Q |
| |
|
||||||| || ||||||||||| | ||| |||||||| |||||| |||||| | |||||| || |||| | ||| ||||||||||||||||| |
|
|
| T |
1257677 |
actttgacattagatattgcatcgtgacataagcatatgaaagtgtatacaagactcaattatcatgtggccaatttgccaccttaaagaaacttcacaa |
1257776 |
T |
|
| Q |
110 |
ctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagca |
181 |
Q |
| |
|
||||||||||| || ||| |||||||| |||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
1257777 |
atatgaagcagatgtgtcattttttgatgcgagtttcagaattgaagtgagaatattatcaaaaataaagca |
1257848 |
T |
|
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