View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21557_high_4 (Length: 488)

Name: NF21557_high_4
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21557_high_4
NF21557_high_4
[»] chr8 (4 HSPs)
chr8 (19-238)||(11334089-11334308)
chr8 (284-477)||(11333849-11334042)
chr8 (87-125)||(11293768-11293806)
chr8 (90-126)||(39463099-39463135)
[»] chr5 (7 HSPs)
chr5 (21-88)||(19851839-19851906)
chr5 (21-53)||(8235459-8235491)
chr5 (24-76)||(12399337-12399389)
chr5 (28-76)||(14509906-14509954)
chr5 (22-78)||(20269521-20269577)
chr5 (90-126)||(21591812-21591848)
chr5 (90-126)||(21595929-21595965)
[»] chr4 (5 HSPs)
chr4 (19-82)||(5542481-5542544)
chr4 (87-126)||(48801503-48801542)
chr4 (208-237)||(19597189-19597218)
chr4 (19-51)||(25129766-25129798)
chr4 (21-77)||(47493207-47493263)
[»] chr3 (5 HSPs)
chr3 (21-78)||(33068270-33068327)
chr3 (87-126)||(38341064-38341103)
chr3 (87-126)||(48655124-48655163)
chr3 (21-78)||(42514769-42514829)
chr3 (19-52)||(37448522-37448555)
[»] chr2 (6 HSPs)
chr2 (21-77)||(10172826-10172882)
chr2 (22-78)||(34138774-34138830)
chr2 (87-126)||(13215703-13215742)
chr2 (87-126)||(43700732-43700771)
chr2 (19-76)||(25997393-25997450)
chr2 (24-88)||(17524379-17524442)
[»] scaffold0086 (1 HSPs)
scaffold0086 (89-126)||(33049-33086)
[»] chr7 (2 HSPs)
chr7 (22-75)||(4612362-4612415)
chr7 (90-126)||(32811318-32811354)
[»] chr1 (3 HSPs)
chr1 (85-126)||(19349321-19349362)
chr1 (19-76)||(46673915-46673972)
chr1 (90-126)||(13054802-13054838)
[»] chr6 (1 HSPs)
chr6 (19-78)||(16433976-16434036)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 11334308 - 11334089
Alignment:
Q  19 atcaaatatattaaatattcaataaatctaaaaaagagttttttatttataaatgtgatcaaaaggagtaatatttattgttgattgtagaaaaacatgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  11334308 atcaaatatattaaatattcaataaatctaaaaaagagttttttatttataaatgtgatcaaaaggagtaatatttattgttgatcgtagaaaagcatgt 11334209  T
Q  119 aaaataaagagaaatgttaacgactacccttgttgcattctttaagtgtcttaaatgtaacttcttcnnnnnnnatgagaacttgtatgttcaatgcatt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  11334208 aaaataaagagaaatgttaacgactacccttgttgcattctttaagtgtcttaaatgtaacttcttctttttttatgagaacttgtatgttcaatgcatt 11334109  T
Q  219 agaaattgaactatttgacc 238  Q
    ||||||||||||||||||||    
T  11334108 agaaattgaactatttgacc 11334089  T

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Target: chr8; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 284 - 477
Target Start/End: Complemental strand, 11334042 - 11333849
Alignment:
Q  284 taggatactcattacgaacgaagatttattttggttatttcacaatattcatgtatgctaatttataacaaggataannnnnnnnagaaactaaattagc 383  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||| |||||||||    
T  11334042 taggatactcattacgagcgaagatttattttggttatttcacaatattcatgtatgctaatttataacaaggataattttttttagaaaataaattagc 11333943  T
Q  384 cttcttcaataatataaattagtcactaacttagtaacatagtgactaatttgtcttcaccatagtatcatgaagtactttaagttttattttc 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11333942 cttcttcaataatataaattagtcactaacttagtaacatagtgactaatttgtcttcaccatagtatcatgacgtactttaagttttattttc 11333849  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 11293806 - 11293768
Alignment:
Q  87 taatatttattgttgattgtagaaaaacatgtaaaataa 125  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  11293806 taatatttattgttgattgaagaaaaagatgtaaaataa 11293768  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 39463135 - 39463099
Alignment:
Q  90 tatttattgttgattgtagaaaaacatgtaaaataaa 126  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  39463135 tatttattgttgattgaagaaaaagatgtaaaataaa 39463099  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 19851839 - 19851906
Alignment:
Q  21 caaatatattaaatattcaataaatctaaaaaagagttttttatttataaatgtgatcaaaaggagta 88  Q
    |||||| ||||| |||||||||| ||||||||| | ||||||||||||||||||| ||  ||||||||    
T  19851839 caaatacattaagtattcaataattctaaaaaataattttttatttataaatgtgttcggaaggagta 19851906  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 8235459 - 8235491
Alignment:
Q  21 caaatatattaaatattcaataaatctaaaaaa 53  Q
    |||||||||||| ||||||||||||||||||||    
T  8235459 caaatatattaattattcaataaatctaaaaaa 8235491  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 12399337 - 12399389
Alignment:
Q  24 atatattaaatattcaataaatctaaaaaagagttttttatttataaatgtga 76  Q
    ||||||||| |||||||||||||||||| |  |||||||  ||||||||||||    
T  12399337 atatattaattattcaataaatctaaaatattgttttttgattataaatgtga 12399389  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 14509906 - 14509954
Alignment:
Q  28 attaaatattcaataaatctaaaaaagagttttttatttataaatgtga 76  Q
    ||||| ||||||||| ||||||||||   ||||||||||||||||||||    
T  14509906 attaattattcaatatatctaaaaaattattttttatttataaatgtga 14509954  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 20269521 - 20269577
Alignment:
Q  22 aaatatattaaatattcaataaatctaaaaaagagttttttatttataaatgtgatc 78  Q
    ||||| ||||| ||||||||  ||||||||||  ||||||| |||||||||||||||    
T  20269521 aaatacattaattattcaatgtatctaaaaaattgttttttgtttataaatgtgatc 20269577  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 21591812 - 21591848
Alignment:
Q  90 tatttattgttgattgtagaaaaacatgtaaaataaa 126  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  21591812 tatttattgttgattgaagaaaaatatgtaaaataaa 21591848  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 21595929 - 21595965
Alignment:
Q  90 tatttattgttgattgtagaaaaacatgtaaaataaa 126  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  21595929 tatttattgttgattgaagaaaaatatgtaaaataaa 21595965  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 5542481 - 5542544
Alignment:
Q  19 atcaaatatattaaatattcaataaatctaaaaaagagttttttatttataaatgtgatcaaaa 82  Q
    |||||||| |||||||||| ||||||  ||||||| |  |||||||||||||||||||||||||    
T  5542481 atcaaatacattaaatattaaataaacttaaaaaatatatttttatttataaatgtgatcaaaa 5542544  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 48801503 - 48801542
Alignment:
Q  87 taatatttattgttgattgtagaaaaacatgtaaaataaa 126  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  48801503 taatatttattgttgattgaagaaaaagatgtaaaataaa 48801542  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 237
Target Start/End: Original strand, 19597189 - 19597218
Alignment:
Q  208 ttcaatgcattagaaattgaactatttgac 237  Q
    ||||||||||||||||||||||||||||||    
T  19597189 ttcaatgcattagaaattgaactatttgac 19597218  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 25129766 - 25129798
Alignment:
Q  19 atcaaatatattaaatattcaataaatctaaaa 51  Q
    ||||||||||||| |||||||||||||||||||    
T  25129766 atcaaatatattagatattcaataaatctaaaa 25129798  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 47493263 - 47493207
Alignment:
Q  21 caaatatattaaatattcaataaatctaaaaaagagttttttatttataaatgtgat 77  Q
    |||||| ||||  |||||||||||||||||||  ||||||||| |||||||| ||||    
T  47493263 caaatacattaggtattcaataaatctaaaaagtagttttttacttataaatatgat 47493207  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 33068270 - 33068327
Alignment:
Q  21 caaatatattaaatattcaataaatctaaaaaagagttttttatttataaatgtgatc 78  Q
    ||||||||||||||||||||| ||| ||||||| | |||||| ||||||||| |||||    
T  33068270 caaatatattaaatattcaatgaatgtaaaaaataattttttgtttataaatatgatc 33068327  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 38341103 - 38341064
Alignment:
Q  87 taatatttattgttgattgtagaaaaacatgtaaaataaa 126  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  38341103 taatatttattgttgattgaagaaaaagatgtaaaataaa 38341064  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 48655124 - 48655163
Alignment:
Q  87 taatatttattgttgattgtagaaaaacatgtaaaataaa 126  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  48655124 taatatttattgttgattgaagaaaaagatgtaaaataaa 48655163  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 42514829 - 42514769
Alignment:
Q  21 caaatatattaaatattcaataaatctaaaaaaga---gttttttatttataaatgtgatc 78  Q
    ||||||||||| ||||||||||||  ||||||| |   |||||||||||||||||||||||    
T  42514829 caaatatattagatattcaataaacataaaaaaaaattgttttttatttataaatgtgatc 42514769  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 37448522 - 37448555
Alignment:
Q  19 atcaaatatattaaatattcaataaatctaaaaa 52  Q
    |||||||| |||||||||||||||||||||||||    
T  37448522 atcaaatacattaaatattcaataaatctaaaaa 37448555  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 10172826 - 10172882
Alignment:
Q  21 caaatatattaaatattcaataaatctaaaaaagagttttttatttataaatgtgat 77  Q
    |||||| |||| |||||||||||||||||||||  ||| ||| ||||||||||||||    
T  10172826 caaatacattagatattcaataaatctaaaaaattgttatttgtttataaatgtgat 10172882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 34138774 - 34138830
Alignment:
Q  22 aaatatattaaatattcaataaatctaaaaaagagttttttatttataaatgtgatc 78  Q
    |||||||| || ||||||||||| ||||||||  ||||||| |||||||||||||||    
T  34138774 aaatatatcaattattcaataaacctaaaaaattgttttttgtttataaatgtgatc 34138830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 13215703 - 13215742
Alignment:
Q  87 taatatttattgttgattgtagaaaaacatgtaaaataaa 126  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  13215703 taatatttattgttgattgaagaaaaagatgtaaaataaa 13215742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 43700771 - 43700732
Alignment:
Q  87 taatatttattgttgattgtagaaaaacatgtaaaataaa 126  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  43700771 taatatttattgttgattgaagaaaaagatgtaaaataaa 43700732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 25997393 - 25997450
Alignment:
Q  19 atcaaatatattaaatattcaataaatctaaaaaagagttttttatttataaatgtga 76  Q
    |||| |||||||||  |||||||||| ||||||||  | |||||||||||||||||||    
T  25997393 atcatatatattaatcattcaataaacctaaaaaattggtttttatttataaatgtga 25997450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 17524379 - 17524442
Alignment:
Q  24 atatattaaatattcaataaatctaaaaaagagttttttatttataaatgtgatcaaaaggagta 88  Q
    |||||| || |||||||||||||||||||| |  | ||||||||||||| ||||||||| |||||    
T  17524379 atatataaattattcaataaatctaaaaaata-atatttatttataaatatgatcaaaaagagta 17524442  T

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Target: scaffold0086 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 33049 - 33086
Alignment:
Q  89 atatttattgttgattgtagaaaaacatgtaaaataaa 126  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  33049 atatttattgttgattgaagaaaaatatgtaaaataaa 33086  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 4612362 - 4612415
Alignment:
Q  22 aaatatattaaatattcaataaatctaaaaaagagttttttatttataaatgtg 75  Q
    ||||| |||||||||| ||| ||| ||||||  |||||||||||||||||||||    
T  4612362 aaatacattaaatatttaatgaatttaaaaattagttttttatttataaatgtg 4612415  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 32811318 - 32811354
Alignment:
Q  90 tatttattgttgattgtagaaaaacatgtaaaataaa 126  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  32811318 tatttattgttgattgaagaaaaagatgtaaaataaa 32811354  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 19349362 - 19349321
Alignment:
Q  85 agtaatatttattgttgattgtagaaaaacatgtaaaataaa 126  Q
    ||||||||||||||||||||| ||||||| ||| ||||||||    
T  19349362 agtaatatttattgttgattgaagaaaaagatgcaaaataaa 19349321  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 46673915 - 46673972
Alignment:
Q  19 atcaaatatattaaatattcaataaatctaaaaaagagttttttatttataaatgtga 76  Q
    |||||||| |||||||||||||||||||  ||||| | | ||||| ||||||||||||    
T  46673915 atcaaatacattaaatattcaataaatcccaaaaacaatattttacttataaatgtga 46673972  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 13054838 - 13054802
Alignment:
Q  90 tatttattgttgattgtagaaaaacatgtaaaataaa 126  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  13054838 tatttattgttgattgtagaaaaagatgcaaaataaa 13054802  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 16433976 - 16434036
Alignment:
Q  19 atcaaatatattaaatattcaataaatct-aaaaaagagttttttatttataaatgtgatc 78  Q
    |||||||| |||| ||||||||||||| | |||||| | | ||||||||||||||||||||    
T  16433976 atcaaatacattagatattcaataaattttaaaaaataatcttttatttataaatgtgatc 16434036  T

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