View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21557_high_5 (Length: 461)
Name: NF21557_high_5
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21557_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 9501003 - 9500566
Alignment:
| Q |
1 |
gtatagactatctgggaagctgcagcaatttgttactccaacacaaaggacatctggataattcattaagaaacgaaaattatttgtgtacgnnnnnnnn |
100 |
Q |
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| T |
9501003 |
gtatagactatctgggaagctgcagcaatttgttactccaacacaaaggacatctggataattcattaagaaacgaaaattat--gtgtacgaaaaaaaa |
9500906 |
T |
|
| Q |
101 |
nntgcataccaaacagtaggaacttaatccaccagagtaggactggtcaaggctccggtctgctaaaaactgttttagcaccaaagcaagaggagtagca |
200 |
Q |
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| T |
9500905 |
--tgcataccaaacagtaggaacttaatccaccagagtaggactggtcaaggctccggtctgctaaaaactgttttagcaccaaagcaagaggagtagca |
9500808 |
T |
|
| Q |
201 |
gcaggaaattgttcagtcaactccttaacctatgggaagtagaatcatattttaattgtcaagcaataaaattgacaagccagtgatacatccaaacaca |
300 |
Q |
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| T |
9500807 |
gcaggaaattgttcagtcaactccttaacctatgggaagtagaatcatattttaattgtcaagcaataaaattgacaagccagtgatacttccaaacata |
9500708 |
T |
|
| Q |
301 |
gtatttatcaatgtagcaaataggttggagaacagaaaattcaactatggtcttccatacaccctagaacctagtcaagtttcactttagctgaagggtg |
400 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9500707 |
gtatttatcattgtagcaaataggttggagaacagaaaattcaactatggtcttccatacaccctagaacctagtcaagtttcactttagctgaagggtg |
9500608 |
T |
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| Q |
401 |
gagattggtttaatctccacccaagcagagagcaataatcat |
442 |
Q |
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| T |
9500607 |
gagattggtttaatctccacccaagcagagagcaataatcat |
9500566 |
T |
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