View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21557_high_6 (Length: 459)
Name: NF21557_high_6
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21557_high_6 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 10 - 442
Target Start/End: Original strand, 16382938 - 16383370
Alignment:
| Q |
10 |
aaatgaatggataaaaggtaaagagcatgaaattttggtgacataccgtaaaagcattcctagcctcactattatatatgtctttcttgctaatgttgtg |
109 |
Q |
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||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16382938 |
aaatgaatgaataaaatctaaagagcttgaaattttggtgacataccgtaaaagcattcctagcctcactattatatatgtctttcttgctaatgttgtg |
16383037 |
T |
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| Q |
110 |
aaacatttgtgggaattggacaaaagcaagatcttgagatattttaggatcaagaaaaaagcacatggattgtttggctgatgatgaatcattacaattc |
209 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16383038 |
aaacatttgagggaattggacaaaagcaagatcttgagatattttaggatcaagaaaaaagcacatggattgtttggctgatgatgaatcattacaattc |
16383137 |
T |
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| Q |
210 |
atatcacaatctacaataagaacataagggccattgctgattagccctgataccctaagctgtaatcacatttgatgaaatgtttaaatgataagtatat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16383138 |
atatcacaatctacaataagaacataagggccattgctgattagccctgataccctaagctgtaatcacatttgatgaaatgtttaaatgataagtatat |
16383237 |
T |
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| Q |
310 |
gcatatcatatgcattgagaaaattatgaggattgtttagagatcaaattaaatgagtacacaccaatgtattgagagctcctcctttgtatctatgagg |
409 |
Q |
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| T |
16383238 |
gcatataatatgtattgagaaaattatgagcattgtttagagattaaattaaatgagtacacaccaatgtattgagagctcctcctttgtatctatgagg |
16383337 |
T |
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| Q |
410 |
aacatgtggtcttttttcacgagacacataaac |
442 |
Q |
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| T |
16383338 |
aacatgtggtcttttttcacgagacacataaac |
16383370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 37 - 301
Target Start/End: Complemental strand, 15725 - 15461
Alignment:
| Q |
37 |
tgaaattttggtgacataccgtaaaagcattcctagcctcactattatatatgtctttcttgctaatgttgtgaaacatttgtgggaattggacaaaagc |
136 |
Q |
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||||||||||||||||||||||||||||| |||||| || ||||| |||||||||||||||||||| ||||||||||||||| |||||||| |||||||| |
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| T |
15725 |
tgaaattttggtgacataccgtaaaagcagtcctagtctgactatcatatatgtctttcttgctaaggttgtgaaacatttgagggaattgaacaaaagc |
15626 |
T |
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| Q |
137 |
aagatcttgagatattttaggatcaagaaaaaagcacatggattgtttggctgatgatgaatcattacaattcatatcacaatctacaataagaacataa |
236 |
Q |
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| T |
15625 |
aacatctttagaggtttcaggatcaagaaaaaagcacatagattgtttggctgatgatgcatcattacaattcatatcacaatctaccacaagaacataa |
15526 |
T |
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| Q |
237 |
gggccattgctgattagccctgataccctaagctgtaatcacatttgatgaaatgtttaaatgat |
301 |
Q |
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| T |
15525 |
ggtccattgctgattagccctgacaccctaagctgtaatcacatttgatgaaatgtttaaatgat |
15461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 365 - 442
Target Start/End: Complemental strand, 15295 - 15218
Alignment:
| Q |
365 |
agtacacaccaatgtattgagagctcctcctttgtatctatgaggaacatgtggtcttttttcacgagacacataaac |
442 |
Q |
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| T |
15295 |
agtacataccaatgtattgagagctcctcctttgaatctgtgaggaacatttggtcttttttcacgagacacataaac |
15218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 43 - 271
Target Start/End: Original strand, 17581878 - 17582106
Alignment:
| Q |
43 |
tttggtgacataccgtaaaagcattcctagcctcactattatatatgtctttcttgctaatgttgtgaaacatttgtgggaattggacaaaagcaagatc |
142 |
Q |
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| T |
17581878 |
tttggtgacataccgtaaaagcattcctagcctgactatcatatatatctttcttgctgaggttgtgaaacatttgagggaattggacaaaagcaagatc |
17581977 |
T |
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| Q |
143 |
ttgagatattttaggatcaagaaaaaagcacatggattgtttggctgatgatgaatcattacaattcatatcacaatctacaataagaacataagggcca |
242 |
Q |
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|| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |
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| T |
17581978 |
tttggaggtttcaggatcaagaaaaaagcacatggattgtttggctgatgatgaatcattacaattcatatcacaatctaagacaagtacataagggcca |
17582077 |
T |
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| Q |
243 |
ttgctgattagccctgataccctaagctg |
271 |
Q |
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| T |
17582078 |
ttgctgattagccctgaaacccttagctg |
17582106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 350 - 442
Target Start/End: Original strand, 17582707 - 17582799
Alignment:
| Q |
350 |
agatcaaattaaatgagtacacaccaatgtattgagagctcctcctttgtatctatgaggaacatgtggtcttttttcacgagacacataaac |
442 |
Q |
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| T |
17582707 |
agatcaaattaaatgagtacacaccaatgtattaagtgctcctcctttgtatctatgaggaacatctggtcttctttcacgagacacataaac |
17582799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 53 - 252
Target Start/End: Complemental strand, 271788 - 271589
Alignment:
| Q |
53 |
taccgtaaaagcattcctagcctcactattatatatgtctttcttgctaatgttgtgaaacatttgtgggaattggacaaaagcaagatcttgagatatt |
152 |
Q |
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|||| |||||||| |||||| | | ||| ||| |||||||| ||||||| ||||||||||||||| |||||||| ||||| |||| || || ||| || |
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| T |
271788 |
taccttaaaagcagtcctagattgattatcatagatgtcttttttgctaaggttgtgaaacatttgagggaattgaacaaatgcaatatatttagaggtt |
271689 |
T |
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| Q |
153 |
ttaggatcaagaaaaaagcacatggattgtttggctgatgatgaatcattacaattcatatcacaatctacaataagaacataagggccattgctgatta |
252 |
Q |
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| T |
271688 |
tctggatcaagaaagaaacacatggcttgtttggctgaagatgggtcattacaatacatatcacagtccactgcaagtacataaggtccattgctgatta |
271589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 442
Target Start/End: Complemental strand, 271480 - 271405
Alignment:
| Q |
367 |
tacacaccaatgtattgagagctcctcctttgtatctatgaggaacatgtggtcttttttcacgagacacataaac |
442 |
Q |
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||||||||||||||||||| || ||||||||| || | ||||||| ||| ||| ||||||||||||||||||| |
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| T |
271480 |
tacacaccaatgtattgagggcacctcctttgaatttgtgaggaagtgatggccttctttcacgagacacataaac |
271405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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