View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21557_high_7 (Length: 403)
Name: NF21557_high_7
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21557_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 28265882 - 28265485
Alignment:
| Q |
1 |
tctaccaaggttcagcagcaccacgagatggaaaggttgattttaacatttacgaaaagtatccatttcaagttggaagggccatgtattccagaaaggt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28265882 |
tctaccaaggttcagcagcaccacgagatggaaaggttgattttaacatttatgaaaagtatccatttcaagttggaagggccatgtattccagaaaggt |
28265783 |
T |
|
| Q |
101 |
gttactttgggattcaaaaacaggccaagtcactgattttaaaacccgttacacttttatcattgacactcaaaataattctaggcatggtcatggactt |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28265782 |
gttactttgggattcaaaaacaggtcaagtcactgatttcaaaacccattacacttttatcattgacactcaaaataattctaggcatggtcatggactt |
28265683 |
T |
|
| Q |
201 |
gcannnnnnnnggctccttttggatttgatattccaccaaattcagctactgcttttatgggcctatttaacataacaaccatgggttcatctagtaacc |
300 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
28265682 |
gcattttttttggctccttttggatttgatattccaccaaattcagctactgcttttatgggcctatttaacatgacaaccatggtttcatctagtaacc |
28265583 |
T |
|
| Q |
301 |
aaattgtttgtgtggagtttgattcgtttccaaatggtgaatggggtgaaacaaccgaacatgtgggaatcaacgttaattgaatcatgtcatctgtg |
398 |
Q |
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|||||||| ||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
28265582 |
aaattgttcttgtggagtttgattcttttcccaatggtgaatggggtgagacaaccgagcatgtgggaatcaacgttaattcaatcatgtcatctgtg |
28265485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 28305906 - 28305744
Alignment:
| Q |
1 |
tctaccaaggttcagcagcaccacgagatggaaaggttgattttaacatttacgaaaagtatccatttcaagttggaagggccatgtattccagaaaggt |
100 |
Q |
| |
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||||||||||||| ||||||||| |||||| | |||||||||||||| | | ||| ||| ||| |||||||||| |||| ||||||||| |||||| |
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| T |
28305906 |
tctaccaaggttctgcagcaccagttgatggagaagttgattttaacatcaatggaaattattcatgtcaagttggatgggctttgtattccaaaaaggt |
28305807 |
T |
|
| Q |
101 |
gttactttgggattcaaaaacaggccaagtcactgattttaaaacccgttacacttttatcat |
163 |
Q |
| |
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|||||||||||| ||||||||||| ||| ||||||| || | ||| | |||||||||||||| |
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| T |
28305806 |
gttactttgggactcaaaaacaggtcaactcactgacttcacaactcactacacttttatcat |
28305744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 273
Target Start/End: Original strand, 28287920 - 28288125
Alignment:
| Q |
68 |
tcaagttggaagggccatgtattccagaaaggtgttactttgggattcaaaaacaggccaagtcactgattttaaaacccgttacacttttatcattgac |
167 |
Q |
| |
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|||||||||||| | ||| | ||||| || || ||||| ||||| ||||||| ||| ||| ||||||| || | ||||| |||||| ||||| || ||| |
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| T |
28287920 |
tcaagttggaagagtcatattttccaagaaagttttactatgggactcaaaaataggtcaactcactgacttcacaacccattacacctttattatcgac |
28288019 |
T |
|
| Q |
168 |
actcaaaataattctaggcatggtcatggacttgcannnnnnnnggctccttttggatttgatattccaccaaattcagctactgcttttatgggcctat |
267 |
Q |
| |
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|||||||||| |||||| |||| |||||| ||||| || ||||||||||||||| || ||||| ||||| ||| ||| ||| | || |||| |
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| T |
28288020 |
actcaaaatagttctagatatggccatggaattgcatttttcttggttccttttggatttgaaatcccacctaattctgctggtgccttttttggtctat |
28288119 |
T |
|
| Q |
268 |
ttaaca |
273 |
Q |
| |
|
|||||| |
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|
| T |
28288120 |
ttaaca |
28288125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 28295704 - 28295532
Alignment:
| Q |
1 |
tctaccaaggttcagcagcaccacgagatggaaaggttgattttaacatttacgaaaagtatccatttcaagttggaagggccatgtattccagaaaggt |
100 |
Q |
| |
|
|||| |||||||| |||||||| || |||||| | ||| |||| ||||| | ||||| ||| ||| |||||||||||| | | | ||||| ||| || |
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| T |
28295704 |
tctatcaaggttctgcagcacctcgtgatggagaagttaatttcaacatcaatgaaaattattcatgtcaagttggaagagtcttctattcagaaaaagt |
28295605 |
T |
|
| Q |
101 |
gttactttgggattcaaaaacaggccaagtcactgattttaaaacccgttacacttttatcattgacactcaa |
173 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||||| || | ||| | |||||||||| |||| |||||||| |
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|
| T |
28295604 |
gttactttgggattcaaacacaggaaaactcactgacttcacaactcattacacttttgtcatcaacactcaa |
28295532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 342
Target Start/End: Complemental strand, 28295444 - 28295357
Alignment:
| Q |
255 |
tttatgggcctatttaacataacaaccatgggttcatctagtaaccaaattgtttgtgtggagtttgattcgtttccaaatggtgaat |
342 |
Q |
| |
|
|||||||| |||||||||| ||||| |||| |||||||||||||||||||||| ||| || |||||||| || ||||| |||||| |
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| T |
28295444 |
tttatgggtctatttaacaccacaacaatggtttcatctagtaaccaaattgttcatgtagaatttgattctttcgcaaatcgtgaat |
28295357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 387
Target Start/End: Original strand, 28278063 - 28278382
Alignment:
| Q |
71 |
agttggaagggccatgtattccagaaaggtgttactttgggattcaaaaacaggccaagtcactgattttaaaacccgttacacttttatcattgacact |
170 |
Q |
| |
|
||||||||||| | |||| ||| |||||| || || ||||| ||| ||||| ||| || |||| |||||||| | |||||||||||||||||||||| |
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|
| T |
28278063 |
agttggaagggtcgagtatgccaaaaaggtattgctatgggaatcagccacaggtcaactcgctgactttaaaactcattacacttttatcattgacact |
28278162 |
T |
|
| Q |
171 |
caaaataattctaggcatggtcatggacttgcannnnnnnnggctccttttggatttgatattccaccaaattcagctactgcttttatgggcctattta |
270 |
Q |
| |
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|||||| | ||| ||||||||||| |||| | ||| | ||| |||| |||||||| ||||| ||| || || ||||||||||||| |
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| T |
28278163 |
caaaatcgtactacatatggtcatggaattgcgtttttccttgttccggtgggaattgaaattccacccaattctgctggtggcttgatgggcctattta |
28278262 |
T |
|
| Q |
271 |
acataacaaccatgggttcat---ctagtaaccaaattgtttgtgtggagtttgattcgtttccaaatggtgaatggggtgaaacaaccgaacatgtggg |
367 |
Q |
| |
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||| ||||| |||| ||||| ||||||||| ||||||| ||| ||||||||||| || ||||| |||||| | || ||||| || |||||||| |
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| T |
28278263 |
acaccacaacaatggtttcatcatctagtaaccgaattgttcatgttgagtttgattctttcgcaaatagtgaatttagcgagacaacagagcatgtggg |
28278362 |
T |
|
| Q |
368 |
aatcaacgttaattgaatca |
387 |
Q |
| |
|
||||||| ||||| ||||| |
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|
| T |
28278363 |
aatcaacaataattcaatca |
28278382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 387
Target Start/End: Complemental strand, 28305643 - 28305514
Alignment:
| Q |
258 |
atgggcctatttaacataacaaccatgggttcatctagtaaccaaattgtttgtgtggagtttgattcgtttccaaatggtgaatggggtgaaacaaccg |
357 |
Q |
| |
|
||||| ||||| |||| ||||| ||| ||||||||||||||| |||||| ||||||||||||||| || ||||| |||||| | || ||||| | |
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|
| T |
28305643 |
atgggactattcaacaccacaacaatgctttcatctagtaaccatattgttcatgtggagtttgattctttcgcaaatagtgaatttagcgagacaacag |
28305544 |
T |
|
| Q |
358 |
aacatgtgggaatcaacgttaattgaatca |
387 |
Q |
| |
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| T |
28305543 |
agcatgtgggaatcaacaataattcaatca |
28305514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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