View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21557_low_10 (Length: 350)
Name: NF21557_low_10
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21557_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 332
Target Start/End: Complemental strand, 813595 - 813280
Alignment:
| Q |
20 |
attcaattttgtttgtatgaactaacaaaacaaaaaatctcttgcaacctttttgacctccatttagaggtaatacatcacatttttcatggtaggaaat |
119 |
Q |
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| T |
813595 |
attcaattttgtttgtatgaaccaacaaaacaaaaaatctcttgcaacctttttgacctccatttagaggtaatacatcaccttttttatggtggaaaat |
813496 |
T |
|
| Q |
120 |
gattaatctttctcatgtgaaataccaccttagataagtcttctgataaaataaacgaggacggtggtctttagtatgaatgaattcttgggtgaagtac |
219 |
Q |
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| T |
813495 |
gattaaccttttccatatgaaatgccacattagataagtcttctggtaaaataaacgaggacggtggtctttagtatgaatgaattcttgggtgaagtac |
813396 |
T |
|
| Q |
220 |
ca---ttgctcgataacaatactgtttaaatactttcatttttattttgctctattcaattgttccaaatcatatttattgtgcattaaatattttgtgt |
316 |
Q |
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| T |
813395 |
cattgttgctcgataacaatactgtttaaatactttcatttttattttgctctattgaattgttccaaatcatatttattgtgcattaagtattttgtgt |
813296 |
T |
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| Q |
317 |
gatatagtccaattgt |
332 |
Q |
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|||||| ||||||||| |
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| T |
813295 |
gatatattccaattgt |
813280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 19768007 - 19767884
Alignment:
| Q |
20 |
attcaattttgtttgtatgaactaacaaa-acaaaaaatctcttgcaacctttttgacctccatttagaggtaatacatcacatttttcatggtaggaaa |
118 |
Q |
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| T |
19768007 |
attcaattttgtttgtatgaaccaaaaaacaaaaaaaaactcttgtaaccttttttacctccatttggaggtaaaacatcaccttttttatggtgggaaa |
19767908 |
T |
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| Q |
119 |
tgattaatctttctcatgtgaaat |
142 |
Q |
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| T |
19767907 |
ggattaaactttcccatatgaaat |
19767884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 27855608 - 27855563
Alignment:
| Q |
106 |
tcatggtaggaaatgattaatctttctcatgtgaaataccacctta |
151 |
Q |
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| T |
27855608 |
tcatggtgggaaatgattaacctttcccatgtgaaatgccacctta |
27855563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 18950452 - 18950581
Alignment:
| Q |
20 |
attcaattttgtttgtatgaactaacaaa--acaaaaaatctcttgcaacctttttgacctccatttagaggtaatacatcacatttttcatggtaggaa |
117 |
Q |
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|||||||||||||||||| ||| |||||| | ||||||||||||| ||||||||||| | |||||| ||||||| || |||| ||| |||||| |||| |
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| T |
18950452 |
attcaattttgtttgtataaaccaacaaatcaaaaaaaatctcttgtaacctttttgatc-ccatttggaggtaaaacttcacctttcccatggtgggaa |
18950550 |
T |
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| Q |
118 |
atgattaatctttctcatgtgaaataccacc |
148 |
Q |
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| T |
18950551 |
aggattaaccttttccatatgaaatgccacc |
18950581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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