View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21557_low_11 (Length: 345)

Name: NF21557_low_11
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21557_low_11
NF21557_low_11
[»] chr1 (13 HSPs)
chr1 (194-335)||(2094366-2094503)
chr1 (21-90)||(2094252-2094321)
chr1 (190-269)||(11821159-11821238)
chr1 (195-271)||(3792557-3792633)
chr1 (195-270)||(39650194-39650269)
chr1 (188-268)||(37260911-37260991)
chr1 (187-267)||(42883751-42883831)
chr1 (213-270)||(5602942-5602999)
chr1 (194-271)||(35392108-35392185)
chr1 (194-256)||(35391487-35391549)
chr1 (195-268)||(33617644-33617717)
chr1 (215-268)||(49033755-49033808)
chr1 (212-268)||(3792296-3792352)
[»] chr5 (15 HSPs)
chr5 (98-269)||(17644507-17644679)
chr5 (91-172)||(7164274-7164355)
chr5 (189-268)||(11135741-11135820)
chr5 (207-268)||(6636919-6636980)
chr5 (91-200)||(1145776-1145886)
chr5 (212-270)||(3458012-3458070)
chr5 (213-270)||(25787864-25787921)
chr5 (206-270)||(34017635-34017699)
chr5 (193-264)||(30491798-30491869)
chr5 (189-271)||(6158942-6159023)
chr5 (186-268)||(25760509-25760591)
chr5 (189-238)||(3759583-3759632)
chr5 (193-274)||(6702364-6702445)
chr5 (123-172)||(40266539-40266588)
chr5 (193-269)||(36580222-36580298)
[»] chr3 (15 HSPs)
chr3 (91-268)||(54528855-54529034)
chr3 (195-269)||(6162687-6162761)
chr3 (21-71)||(53782299-53782349)
chr3 (195-268)||(44833470-44833543)
chr3 (190-271)||(47064861-47064942)
chr3 (194-281)||(30533882-30533969)
chr3 (206-268)||(4969875-4969937)
chr3 (195-269)||(53827666-53827740)
chr3 (189-269)||(11342889-11342969)
chr3 (196-268)||(53814567-53814639)
chr3 (194-269)||(3539667-3539742)
chr3 (195-268)||(15040681-15040754)
chr3 (223-268)||(44430418-44430463)
chr3 (195-268)||(44836483-44836556)
chr3 (223-267)||(13843626-13843670)
[»] chr2 (8 HSPs)
chr2 (190-272)||(37893008-37893090)
chr2 (206-268)||(22788001-22788063)
chr2 (195-270)||(18387239-18387314)
chr2 (217-270)||(5037297-5037350)
chr2 (195-268)||(8273245-8273318)
chr2 (207-268)||(19984720-19984781)
chr2 (195-268)||(12967270-12967344)
chr2 (212-268)||(20685006-20685062)
[»] chr6 (11 HSPs)
chr6 (195-272)||(35060900-35060977)
chr6 (195-268)||(14153354-14153427)
chr6 (193-272)||(31522538-31522617)
chr6 (111-172)||(807122-807183)
chr6 (194-268)||(23608427-23608501)
chr6 (188-268)||(14430944-14431024)
chr6 (187-268)||(14431471-14431552)
chr6 (195-268)||(17436546-17436619)
chr6 (195-272)||(32275776-32275853)
chr6 (70-121)||(806687-806739)
chr6 (194-274)||(23608983-23609063)
[»] chr8 (10 HSPs)
chr8 (209-269)||(37687331-37687391)
chr8 (193-269)||(43640976-43641052)
chr8 (190-268)||(23558983-23559061)
chr8 (196-268)||(35841397-35841469)
chr8 (195-269)||(33220792-33220866)
chr8 (195-271)||(31762238-31762314)
chr8 (223-269)||(9418586-9418632)
chr8 (195-268)||(5967242-5967315)
chr8 (206-267)||(9384617-9384678)
chr8 (212-269)||(33220023-33220079)
[»] chr4 (12 HSPs)
chr4 (189-268)||(27992303-27992382)
chr4 (195-270)||(33164510-33164585)
chr4 (190-268)||(38677662-38677740)
chr4 (190-268)||(36217870-36217948)
chr4 (195-268)||(36172165-36172238)
chr4 (217-268)||(37576543-37576594)
chr4 (190-268)||(38676939-38677017)
chr4 (195-265)||(24974151-24974221)
chr4 (190-268)||(54208180-54208258)
chr4 (212-265)||(40312816-40312869)
chr4 (212-265)||(40322892-40322945)
chr4 (207-268)||(54209066-54209127)
[»] chr7 (9 HSPs)
chr7 (194-273)||(26009364-26009443)
chr7 (195-268)||(38790884-38790958)
chr7 (123-172)||(149051-149100)
chr7 (213-268)||(42548161-42548216)
chr7 (190-268)||(26011953-26012031)
chr7 (207-268)||(28138759-28138820)
chr7 (195-265)||(5177-5247)
chr7 (195-273)||(1537251-1537329)
chr7 (190-271)||(30359702-30359781)
[»] scaffold1063 (1 HSPs)
scaffold1063 (195-270)||(1473-1548)
[»] scaffold0262 (1 HSPs)
scaffold0262 (189-268)||(8384-8463)
[»] scaffold1763 (1 HSPs)
scaffold1763 (190-268)||(364-442)


Alignment Details
Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 194 - 335
Target Start/End: Original strand, 2094366 - 2094503
Alignment:
Q  194 agttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaaaaaattgtacgttatatatgaga 293  Q
    |||||| |||| |||||||||||| |||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||    |||||||    
T  2094366 agttaatatgcgtagggatattttagacatttactttggaaatgagcagaacaatttgggtaatgagcagaattcaaaaaattgtacgt----tatgaga 2094461  T
Q  294 gtgaaaaagttaagaacttgttaaataggtgatcatatcatt 335  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2094462 gtgaaaaagttaagaacttgttaaataggtgatcatatcatt 2094503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 2094252 - 2094321
Alignment:
Q  21 tttgaccacaccccacttggattggaccaggctgctggcctttaagagaaacaaaaccagcgtaagttaa 90  Q
    ||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||    
T  2094252 tttgatcacaccccacttggattggaccaggctgctggcttttatgagaaacaaaaccagcgtgagttaa 2094321  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 269
Target Start/End: Complemental strand, 11821238 - 11821159
Alignment:
Q  190 cgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattca 269  Q
    ||||||||||||||||||||   ||||||||| |||||||||| |||||||  |||||||||| ||||||||||||||||    
T  11821238 cgtaagttaacatgcataggagcattttggacttttactttgggaatgaacgaaaccatttggataatgagcagaattca 11821159  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 3792633 - 3792557
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaaa 271  Q
    |||||||||| || ||  ||||||||| |||||||||||||||| |  ||| |||||||||||||||||||||||||    
T  3792633 gttaacatgcgtaagggcattttggacttttactttggaaatgagcgaaactatttgggtaatgagcagaattcaaa 3792557  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 39650269 - 39650194
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaa 270  Q
    |||||||||| |||||  |||||||||||||||||| | ||||| |  |||||||| |||||||||||||||||||    
T  39650269 gttaacatgcgtaggggcattttggacatttactttaggaatgagcgaaaccatttaggtaatgagcagaattcaa 39650194  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 37260911 - 37260991
Alignment:
Q  188 tgcgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||| |||||||||||||||||  |||||||||||||||||||  ||||  || |||| ||||||||| ||||| |||||    
T  37260911 tgcgtgagttaacatgcataggggcattttggacatttactttgagaatgggcaaaaccgtttgggtaaagagcataattc 37260991  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 42883751 - 42883831
Alignment:
Q  187 ttgcgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaatt 267  Q
    |||||| ||||||||||  ||||||||||||||||||||| ||| ||||||| || |||||||| | ||| ||||| ||||    
T  42883751 ttgcgtgagttaacatgtgtagggatattttggacatttattttagaaatgagcaaaaccatttagctaaagagcataatt 42883831  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 5602999 - 5602942
Alignment:
Q  213 attttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaa 270  Q
    ||||||| |||||||||||| ||||| || | |||||||||||| |||||||||||||    
T  5602999 attttggtcatttactttgggaatgagcaaatccatttgggtaaagagcagaattcaa 5602942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 35392108 - 35392185
Alignment:
Q  194 agttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaaa 271  Q
    ||||||||||| |||   ||||||| ||||||||||||| ||||| || ||| |||||||||| ||||||| ||||||    
T  35392108 agttaacatgcgtagaagtattttgaacatttactttgggaatgagcaaaacaatttgggtaaagagcagagttcaaa 35392185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 35391549 - 35391487
Alignment:
Q  194 agttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaa 256  Q
    ||||||||||| || |  ||||||||||||||||||||| |||||||  |||||||| |||||    
T  35391549 agttaacatgcgtatgagtattttggacatttactttgggaatgaacgaaaccatttaggtaa 35391487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 33617717 - 33617644
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||||||||||||||  |||| || |||||||||||  ||||| |  | |||||||||||||||||| |||||    
T  33617717 gttaacatgcataggggcatttcggtcatttactttgagaatgagcgaatccatttgggtaatgagcataattc 33617644  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 49033755 - 49033808
Alignment:
Q  215 tttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||||||||||||||||| ||||| |  |||||||||  |||||||||||||||    
T  49033755 tttggacatttactttgggaatgagcggaaccatttgaataatgagcagaattc 49033808  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 3792352 - 3792296
Alignment:
Q  212 tattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||||||||||||| ||||  |||||  | || |||||||||||||||||||||||    
T  3792352 tattttggacatttattttgagaatgagtagaatcatttgggtaatgagcagaattc 3792296  T

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Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 98 - 269
Target Start/End: Original strand, 17644507 - 17644679
Alignment:
Q  98 gggttttagtgtgtttttcttttgtgtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagcatgacata-cttatgttgcgtaagt 196  Q
    ||||||||||||||  || || || |||| |||||||| ||||||||| |||||||| | ||||||||||||||| |||  || ||| | |||||| | |    
T  17644507 gggttttagtgtgtgatttttctgcgtgatttaagtcacgcagcgtgagttaactcatgtaaatttaacactagcgtgagttaacttttattgcgtgaat 17644606  T
Q  197 taacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattca 269  Q
    |||||||| ||||| ||||||||||||||||||||| ||||| |  | |||||| ||||||||||| ||||||    
T  17644607 taacatgcgtaggggtattttggacatttactttgggaatgagcgaatccatttcggtaatgagcacaattca 17644679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 7164355 - 7164274
Alignment:
Q  91 tcacgctgggttttagtgtgtttttcttttgtgtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagc 172  Q
    ||||| ||||||||||||||| ||| || || ||||||||||||| || ||||||||||||||| | |||||||||| ||||    
T  7164355 tcacgttgggttttagtgtgtgttttttctgcgtgacttaagtcacgcggcgtgaattaactcatgcaaatttaacattagc 7164274  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 11135820 - 11135741
Alignment:
Q  189 gcgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||||||||||||||| ||||| |||||||| |||||| ||||||||||| |  || ||||||||||| ||||| |||||    
T  11135820 gcgtaagttaacatgcgtaggggtattttggtcatttattttggaaatgagcgaaatcatttgggtaaagagcataattc 11135741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 6636919 - 6636980
Alignment:
Q  207 agggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||||||||||| |||||| ||||| ||||||||||  ||||||| |||||||||||||||    
T  6636919 agggatattttggtcatttattttgggaatgaacatattcatttggataatgagcagaattc 6636980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 200
Target Start/End: Original strand, 1145776 - 1145886
Alignment:
Q  91 tcacgctgggttttagtgtgtttttcttttgtgtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagcatgacat-acttatgttg 189  Q
    |||||||||||||| |||||| ||| || || |||||||||| || ||||||||| |||||||| | |||||| ||| |||| |||  | ||| |||| |    
T  1145776 tcacgctgggttttggtgtgtattttttctgcgtgacttaagacacgcagcgtgagttaactcatgcaaattttacattagcgtgagttaactaatgtag 1145875  T
Q  190 cgtaagttaac 200  Q
    |||||||||||    
T  1145876 cgtaagttaac 1145886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 3458070 - 3458012
Alignment:
Q  212 tattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaa 270  Q
    ||||||||||||||||||||||||||| ||  ||  ||| |||||||||||||||||||    
T  3458070 tattttggacatttactttggaaatgagcaatacggtttcggtaatgagcagaattcaa 3458012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 25787864 - 25787921
Alignment:
Q  213 attttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaa 270  Q
    ||||||| |||||| ||||||||||| ||||||| ||||| ||| |||||||||||||    
T  25787864 attttggtcatttattttggaaatgagcataaccgtttggataaagagcagaattcaa 25787921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 34017635 - 34017699
Alignment:
Q  206 tagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaa 270  Q
    ||||| ||||| || ||||||||||| |||||| |  ||||||||| ||||||||||||||||||    
T  34017635 taggggtatttcggtcatttactttgaaaatgagcggaaccatttgagtaatgagcagaattcaa 34017699  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 264
Target Start/End: Original strand, 30491798 - 30491869
Alignment:
Q  193 aagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcaga 264  Q
    |||||||||||| |||||| ||||| ||| |||||||||| ||||| |  |  |||||||||||||||||||    
T  30491798 aagttaacatgcgtagggacattttcgacttttactttgggaatgagcgaattcatttgggtaatgagcaga 30491869  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 6158942 - 6159023
Alignment:
Q  189 gcgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaaa 271  Q
    |||| ||||||||| | ||||| |||||| |||||||||||||| ||||| |  | ||||||  |||||||||||||||||||    
T  6158942 gcgtgagttaacatacgtaggg-tattttagacatttactttgggaatgagcgaatccatttaagtaatgagcagaattcaaa 6159023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 25760509 - 25760591
Alignment:
Q  186 gttgcgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||||| |||||||   || ||||||||||||  |||||||||| | || || ||||||| ||||||||| |||||||||||    
T  25760509 gttgcgtgagttaactcacacagggatattttgatcatttacttttggaacgagcataaccgtttgggtaaagagcagaattc 25760591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 3759583 - 3759632
Alignment:
Q  189 gcgtaagttaacatgcatagggatattttggacatttactttggaaatga 238  Q
    |||| |||||||||| |||||| |||||||| |||||| |||||||||||    
T  3759583 gcgtgagttaacatgaatagggttattttggtcatttattttggaaatga 3759632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 6702445 - 6702364
Alignment:
Q  193 aagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaaaaaa 274  Q
    |||||||||||| || ||  ||||| ||| |||||||||  ||||| |  ||| ||||||| ||||||||||||||||||||    
T  6702445 aagttaacatgcgtatgggcatttttgacttttactttgagaatgagcgaaactatttgggcaatgagcagaattcaaaaaa 6702364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 40266539 - 40266588
Alignment:
Q  123 gtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagc 172  Q
    ||||||||||||| | ||||||| |||||||||| |||||||||| ||||    
T  40266539 gtgacttaagtcacgtagcgtgagttaactcacgcaaatttaacattagc 40266588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 36580298 - 36580222
Alignment:
Q  193 aagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattca 269  Q
    |||||||||||  ||||||||||||| || |||| ||| ||||| | |  ||||||||  |||||||||||||||||    
T  36580298 aagttaacatgtgtagggatattttgaacttttattttagaaataagcggaaccatttaagtaatgagcagaattca 36580222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 91 - 268
Target Start/End: Original strand, 54528855 - 54529034
Alignment:
Q  91 tcacgctgggttttagtgtgtttttctttt-gtgtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagcatgacata-cttatgtt 188  Q
    ||||||||||||||||| ||||||| |||| ||| ||||||||||||| | ||||| ||||||| |  |||||||||| |||  |||  || || | |||    
T  54528855 tcacgctgggttttagtttgtttttttttttgtgcgacttaagtcatgaaacgtgagttaactcccacaaatttaacattagtgtgaattaactcaggtt 54528954  T
Q  189 gcgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||| ||||||||||  ||||| |||||||||||||||| |||  ||||| || || ||||| ||||| |||||||||||    
T  54528955 gcgtgagttaacatgtgtaggggtattttggacatttacattgagaatgagcaaaatcattttggtaaagagcagaattc 54529034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 6162687 - 6162761
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattca 269  Q
    |||||||||| |||||  ||||||||| |||||||||| ||||| |  |||||||||||||||||||||||||||    
T  6162687 gttaacatgcgtaggggcattttggacttttactttgggaatgagcggaaccatttgggtaatgagcagaattca 6162761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 53782299 - 53782349
Alignment:
Q  21 tttgaccacaccccacttggattggaccaggctgctggcctttaagagaaa 71  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  53782299 tttgaccacaccccacttggattggaccaggctgctgccttttaagagaaa 53782349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 44833543 - 44833470
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||| |||| |||||  ||||||||| |||||||||||||| |||  ||||||||||||||||||||||||||    
T  44833543 gttaatatgcgtaggggcattttggacttttactttggaaataaacggaaccatttgggtaatgagcagaattc 44833470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 47064942 - 47064861
Alignment:
Q  190 cgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaaa 271  Q
    ||||||||||||||| ||||   ||||||||| |||||||||| ||||| || || ||||||||||||||||| ||||||||    
T  47064942 cgtaagttaacatgcgtaggagcattttggacttttactttgggaatgagcagaatcatttgggtaatgagcataattcaaa 47064861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 281
Target Start/End: Original strand, 30533882 - 30533969
Alignment:
Q  194 agttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaaaaaattgtacg 281  Q
    ||||||||||  ||||| ||||||||| |||||||||| |||||| || |||| || | |||| |||||||||||||| |||| ||||    
T  30533882 agttaacatgtgtaggggtattttggatatttactttgaaaatgagcaaaaccgttcgagtaaagagcagaattcaaagaattttacg 30533969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 268
Target Start/End: Complemental strand, 4969937 - 4969875
Alignment:
Q  206 tagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||| |||||| ||| |||||||||| ||||| |  ||||||||||||||||||||||||||    
T  4969937 taggggtattttcgacttttactttgggaatgagcggaaccatttgggtaatgagcagaattc 4969875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 53827666 - 53827740
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattca 269  Q
    |||||||||| |||||  |||||||||||||||||||| ||||| |   || |||| ||||||||||||||||||    
T  53827666 gttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcagaattca 53827740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 269
Target Start/End: Complemental strand, 11342969 - 11342889
Alignment:
Q  189 gcgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattca 269  Q
    |||||| ||||||||| |||||   |||||||| |||||||||| |||||||  |||||||||   |||||||||||||||    
T  11342969 gcgtaaattaacatgcgtaggggctttttggacttttactttgggaatgaacggaaccatttgaacaatgagcagaattca 11342889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 53814567 - 53814639
Alignment:
Q  196 ttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||||||| |||||  ||||||  |||||||||||| ||||| |  | ||||||||||||||||||||||||    
T  53814567 ttaacatgcgtaggggcattttgatcatttactttgggaatgagcgaatccatttgggtaatgagcagaattc 53814639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 3539742 - 3539667
Alignment:
Q  194 agttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattca 269  Q
    ||||||||||  ||||| |||||||  |||||| ||||||||||| || |||||||||| ||| ||||| ||||||    
T  3539742 agttaacatgtgtagggctattttgatcatttattttggaaatgagcaaaaccatttggataaagagcataattca 3539667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 15040754 - 15040681
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||||||||| |||||  ||||  | |||||||||||| ||||| |  | ||||||||||||||||||||||||    
T  15040754 gttaacatgcgtaggggcatttcagtcatttactttgggaatgagcgaatccatttgggtaatgagcagaattc 15040681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 44430463 - 44430418
Alignment:
Q  223 tttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||||||||| ||||| || |||||||||| |||||||||||||||    
T  44430463 tttactttgggaatgagcaaaaccatttggataatgagcagaattc 44430418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 44836483 - 44836556
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||||||||| |||||  | | |||||||||||||| ||||||| |  |||||||| | |||||||||||||||    
T  44836483 gttaacatgcgtaggggcaatatggacatttactttagaaatgagcggaaccatttagataatgagcagaattc 44836556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 13843626 - 13843670
Alignment:
Q  223 tttactttggaaatgaacataaccatttgggtaatgagcagaatt 267  Q
    |||||||||| ||||| |  |||||||||||||||||||||||||    
T  13843626 tttactttgggaatgagcgaaaccatttgggtaatgagcagaatt 13843670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 37893008 - 37893090
Alignment:
Q  190 cgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaaaa 272  Q
    |||||||||||||||||||||  ||||||||| |||||||||| ||||| |  ||||||||||||||| ||||||||||||||    
T  37893008 cgtaagttaacatgcataggggcattttggacttttactttgggaatgagcgaaaccatttgggtaattagcagaattcaaaa 37893090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 22788001 - 22788063
Alignment:
Q  206 tagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||| |||||||| |||||||||||| |||||||| | |||||||||||| |||||||||||    
T  22788001 taggggtattttggtcatttactttgggaatgaacaaatccatttgggtaaagagcagaattc 22788063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 18387314 - 18387239
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaa 270  Q
    |||||||||| || ||  ||||| || ||||||||||| ||||| || ||||||||| ||||||||||||||||||    
T  18387314 gttaacatgcgtaagggcatttttgatatttactttgggaatgagcagaaccatttgagtaatgagcagaattcaa 18387239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 5037350 - 5037297
Alignment:
Q  217 tggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaa 270  Q
    ||||||||||||||||||| ||||| |||| ||| ||||| |||||||||||||    
T  5037350 tggacatttactttggaaacgaacaaaaccgttttggtaaagagcagaattcaa 5037297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 8273318 - 8273245
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||||||||| |||||  |||| || |||||||||||| ||||| |  | ||||||||||||||||||||||||    
T  8273318 gttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccatttgggtaatgagcagaattc 8273245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 19984720 - 19984781
Alignment:
Q  207 agggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||| |||||||| |||||||||| |||| || ||||||| ||||||||| |||||||||||    
T  19984720 aggggtattttggtcatttactttagaaacgagcataaccgtttgggtaaagagcagaattc 19984781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 12967344 - 12967270
Alignment:
Q  195 gttaacatgcatagggatattttggacattt-actttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||||||||| ||||| |||||||||| ||| ||||||  ||||| |  |||||||| |||||||||||||||||    
T  12967344 gttaacatgcgtaggggtattttggactttttactttgagaatgagcggaaccatttaggtaatgagcagaattc 12967270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 20685062 - 20685006
Alignment:
Q  212 tattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||||| ||| |||||||||  ||||| |  ||||||||||||||||||||||||||    
T  20685062 tattttagacttttactttgagaatgagcggaaccatttgggtaatgagcagaattc 20685006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 35060900 - 35060977
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaaaa 272  Q
    |||||||||| |||||  |||||||||||||||||||||||||| |  || |||||||||||||||||||||||||||    
T  35060900 gttaacatgcgtaggggcattttggacatttactttggaaatgagcggaatcatttgggtaatgagcagaattcaaaa 35060977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 14153427 - 14153354
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||||||||| ||||| |||||||| |||||||||||| ||||| || || |||||||||||||||||||||||    
T  14153427 gttaacatgcgtaggggtattttggtcatttactttgggaatgagcaaaatcatttgggtaatgagcagaattc 14153354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 31522538 - 31522617
Alignment:
Q  193 aagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaaaa 272  Q
    |||||||| ||| |||||  |||| || |||||||||||| ||||| |  ||||||||||||||||||||||||||||||    
T  31522538 aagttaacttgcgtaggggcatttcggtcatttactttgggaatgagcggaaccatttgggtaatgagcagaattcaaaa 31522617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 807122 - 807183
Alignment:
Q  111 tttttcttttgtgtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagc 172  Q
    ||||| ||||| ||||||||||||| |||| |||| |||||||||| |||||||||||||||    
T  807122 ttttttttttgcgtgacttaagtcacgcagtgtgagttaactcacgcaaatttaacactagc 807183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 23608501 - 23608427
Alignment:
Q  194 agttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||||||||| |||||||||||| ||| |||| ||||| |||||||  || ||||||  |||||||||||||||    
T  23608501 agttaacatgcgtagggatattttagacttttattttgggaatgaacggaatcatttgaataatgagcagaattc 23608427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 14431024 - 14430944
Alignment:
Q  188 tgcgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||| ||||||||||| |||||| |||||  ||||||||||| ||||||| || |||| ||| |||||  ||||||||||    
T  14431024 tgcgtgagttaacatgcgtagggacattttaaacatttactttagaaatgagcagaaccgtttaggtaaatagcagaattc 14430944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 268
Target Start/End: Original strand, 14431471 - 14431552
Alignment:
Q  187 ttgcgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||||| |||||||||   ||||||| ||||| ||||||||||| | |||||||| |||| |||| |||| ||| |||||||    
T  14431471 ttgcgtgagttaacatatgtagggatgttttgaacatttactttaggaatgaacaaaaccgtttgtgtaaagagtagaattc 14431552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 17436546 - 17436619
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||||||||  |||||| |||| || |||||||||||| || || |  | ||||||||||||||||||||||||    
T  17436546 gttaacatgtgtagggacatttcggtcatttactttgggaacgagcgaatccatttgggtaatgagcagaattc 17436619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 32275776 - 32275853
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaaaa 272  Q
    |||||| |||||||||  ||||  | |||||||||||| ||||| |  |||||||||| ||||||||| |||||||||    
T  32275776 gttaacttgcataggggcatttcagtcatttactttgggaatgagcggaaccatttggataatgagcataattcaaaa 32275853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 806739 - 806687
Alignment:
Q  70 aacaaaaccagcgtaagttaa-tcacgctgggttttagtgtgtttttcttttg 121  Q
    |||||||||||||| |||||| ||||| ||||||| ||||||||||| |||||    
T  806739 aacaaaaccagcgtgagttaactcacgttgggtttcagtgtgttttttttttg 806687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 23608983 - 23609063
Alignment:
Q  194 agttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaaaaaa 274  Q
    |||||||||||| |||  ||||||| || |||| ||| | |||||  | ||||||||| ||||||| ||||||||||||||    
T  23608983 agttaacatgcagaggagtattttgaacttttattttaggaatgagaagaaccatttgagtaatgaccagaattcaaaaaa 23609063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 37687331 - 37687391
Alignment:
Q  209 ggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattca 269  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||||| |||||||||||    
T  37687331 ggatattttggacatttactttggaaatgagcggaaccatttgggtaataagcagaattca 37687391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 43640976 - 43641052
Alignment:
Q  193 aagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattca 269  Q
    |||||||||||| |||||  | ||||  |||||||||||||||||| |  |||||||||||||||||||||||||||    
T  43640976 aagttaacatgcgtaggggcaatttgatcatttactttggaaatgagccaaaccatttgggtaatgagcagaattca 43641052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 23558983 - 23559061
Alignment:
Q  190 cgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||||||||||||| |||||  ||||||||| ||||| |||| ||||| |  |||||||||| |||||||||||||||    
T  23558983 cgtaagttaacatgcgtaggggcattttggacttttaccttggcaatgagcggaaccatttggataatgagcagaattc 23559061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 35841469 - 35841397
Alignment:
Q  196 ttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||||||| |||||||||||||||||||||||||  |||||| || |||  ||| ||||| |||||||||||    
T  35841469 ttaacatgcgtagggatattttggacatttactttaaaaatgagcacaactgttttggtaaagagcagaattc 35841397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 33220792 - 33220866
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattca 269  Q
    |||||||||| |||||  |||||| || |||||||||| |||||    |||||||||||||||||||||||||||    
T  33220792 gttaacatgcgtaggggcattttgaacttttactttgggaatgagtgaaaccatttgggtaatgagcagaattca 33220866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 31762314 - 31762238
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaaa 271  Q
    |||||||||||||||||||||| |   ||||||||||| ||||| |  | |||||||  ||||||||||||||||||    
T  31762314 gttaacatgcatagggatatttcgtttatttactttgggaatgagcgaatccatttgaataatgagcagaattcaaa 31762238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 9418632 - 9418586
Alignment:
Q  223 tttactttggaaatgaacataaccatttgggtaatgagcagaattca 269  Q
    |||||||||| ||||| |  |||||||||||||||||||||||||||    
T  9418632 tttactttgggaatgagcgaaaccatttgggtaatgagcagaattca 9418586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 5967242 - 5967315
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||||||||| |||||  |||| |  |||||||||||| ||||| |  | ||||||||||||||||||||||||    
T  5967242 gttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccatttgggtaatgagcagaattc 5967315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 9384678 - 9384617
Alignment:
Q  206 tagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaatt 267  Q
    |||||| |||||||||||||| |||| |||||| |  |||||||||  ||||||||||||||    
T  9384678 tagggacattttggacatttattttgaaaatgagcggaaccatttgaataatgagcagaatt 9384617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 33220079 - 33220023
Alignment:
Q  212 tattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattca 269  Q
    ||||||| ||||||||||||||| ||| |  |||||||||| ||||||||||||||||    
T  33220079 tattttgaacatttactttggaa-tgagcggaaccatttggataatgagcagaattca 33220023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 268
Target Start/End: Original strand, 27992303 - 27992382
Alignment:
Q  189 gcgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||| ||||||||||||||||| ||||||||||||||| ||| ||||||| || | ||||||||||||||| || |||||    
T  27992303 gcgtgagttaacatgcataggggtattttggacatttattttagaaatgagcaaatccatttgggtaatgaacataattc 27992382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 33164510 - 33164585
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaa 270  Q
    |||||||||| |||||  |||||||||||||||||||  ||||| |  ||||||||||||||||||||||||||||    
T  33164510 gttaacatgcgtaggggcattttggacatttactttgagaatgagcggaaccatttgggtaatgagcagaattcaa 33164585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 38677662 - 38677740
Alignment:
Q  190 cgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||||||||||||||  |||||||||||| | ||||||||||| |||||||| || | ||||||||| |||||||||||    
T  38677662 cgtaagttaacatgcgcagggatattttgaatatttactttgggaatgaacaaaatcgtttgggtaaagagcagaattc 38677740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 268
Target Start/End: Complemental strand, 36217948 - 36217870
Alignment:
Q  190 cgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||||||||||||| |||||  ||||||||| |||||||||| |||||  | ||||||||| |||| |||||||||||    
T  36217948 cgtaagttaacatgcgtaggggcattttggacttttactttgggaatgagtaaaaccatttgagtaaagagcagaattc 36217870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 36172238 - 36172165
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||||||| ||||||| |||||||||| |||||||||| |||||    ||| ||||||||||||||||||||||    
T  36172238 gttaacatacataggggtattttggacttttactttgggaatgagtggaactatttgggtaatgagcagaattc 36172165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 37576594 - 37576543
Alignment:
Q  217 tggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||||||||||||||||| || || |||| |||||||||||||||||||||    
T  37576594 tggacatttactttggaaacgagcaaaaccgtttgggtaatgagcagaattc 37576543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 268
Target Start/End: Complemental strand, 38677017 - 38676939
Alignment:
Q  190 cgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||||||||||||| ||| | ||||||||||||||| ||||| ||||| || |||| ||||| ||| ||| |||||||    
T  38677017 cgtaagttaacatgcgtagaggtattttggacatttattttgggaatgagcaaaaccgtttggataaagaggagaattc 38676939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 24974151 - 24974221
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaa 265  Q
    |||||||||| |||||  |||| || |||||||||||| ||||| || | |||||||| ||||||||||||    
T  24974151 gttaacatgcgtaggggcatttcggtcatttactttgggaatgagcaaatccatttggataatgagcagaa 24974221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 268
Target Start/End: Complemental strand, 54208258 - 54208180
Alignment:
Q  190 cgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||||||||| ||  ||||| |||||||  |||||||||||| ||||| || |||||||||| ||| ||||| |||||    
T  54208258 cgtaagttaacttgagtaggggtattttgatcatttactttgggaatgagcaaaaccatttggataaagagcataattc 54208180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 40312816 - 40312869
Alignment:
Q  212 tattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaa 265  Q
    |||||| ||| |||||||||||||||| |  || ||||||||||||||||||||    
T  40312816 tattttagacttttactttggaaatgagcgaaatcatttgggtaatgagcagaa 40312869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 40322892 - 40322945
Alignment:
Q  212 tattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaa 265  Q
    |||||| ||| |||||||||||||||| |  || ||||||||||||||||||||    
T  40322892 tattttagacttttactttggaaatgagcgaaatcatttgggtaatgagcagaa 40322945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 54209066 - 54209127
Alignment:
Q  207 agggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||||| | || ||||||||||||| ||||||||||||| ||| | ||| |||||||||||    
T  54209066 agggataatatgaacatttactttgggaatgaacataaccgtttagataaagagcagaattc 54209127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 273
Target Start/End: Complemental strand, 26009443 - 26009364
Alignment:
Q  194 agttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaaaaa 273  Q
    ||||||||||| |||| ||||||||| |||||||||||| ||||| || || | ||||||||| ||||||||||| ||||    
T  26009443 agttaacatgcgtaggaatattttggtcatttactttgggaatgagcaaaatcgtttgggtaaagagcagaattcgaaaa 26009364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 38790958 - 38790884
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttgg-aaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||||||||| ||||| |||||||||| |||||||||| |||||| |  |||||||||| |||||||||||||||    
T  38790958 gttaacatgcgtaggggtattttggacttttactttggaaaatgagcgaaaccatttggataatgagcagaattc 38790884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 149100 - 149051
Alignment:
Q  123 gtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagc 172  Q
    ||||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  149100 gtgacttaagtcatgcaacgtgacttaactcacgcaaatttaacactagc 149051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 42548216 - 42548161
Alignment:
Q  213 attttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||||||| |||||||||| ||||| || ||| ||||||||||||||||||||||    
T  42548216 attttggacttttactttgggaatgagcaaaacgatttgggtaatgagcagaattc 42548161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 26011953 - 26012031
Alignment:
Q  190 cgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    ||||||||||||||||||| | |||||||| |||||||||||  |||||  | || | ||||||||| |||||||||||    
T  26011953 cgtaagttaacatgcatagaggtattttggtcatttactttgagaatgattaaaatcgtttgggtaaagagcagaattc 26012031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 28138820 - 28138759
Alignment:
Q  207 agggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||| |||||||| |||||||||||| ||||| || || ||||||||||| |||||||||||    
T  28138820 aggggtattttggtcatttactttgggaatgagcaaaatcatttgggtaaagagcagaattc 28138759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 5177 - 5247
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaa 265  Q
    |||||||||| |||||  |||| || |||||||||||| ||||| |  | |||||||||||||||||||||    
T  5177 gttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccatttgggtaatgagcagaa 5247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 273
Target Start/End: Original strand, 1537251 - 1537329
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaaaaa 273  Q
    ||||||||||  ||||  |||||| ||||||||||||  |||||||   ||  ||||||||||||||||||||||||||    
T  1537251 gttaacatgcgcaggggcattttgaacatttactttgagaatgaacgatactgtttgggtaatgagcagaattcaaaaa 1537329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 30359781 - 30359702
Alignment:
Q  190 cgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaaa 271  Q
    |||||||||||| |||||||||  |||||||| |||||||||| ||||| |  |||   |||||||| ||||||||||||||    
T  30359781 cgtaagttaacaagcatagggacgttttggacttttactttgggaatgagcggaac--gttgggtaaagagcagaattcaaa 30359702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 270
Target Start/End: Complemental strand, 1548 - 1473
Alignment:
Q  195 gttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattcaa 270  Q
    ||||||||||  ||||  ||||||||| ||||||||  |||||| |  ||||||||||||||||||||||||||||    
T  1548 gttaacatgcgcaggggcattttggacttttactttaaaaatgagcggaaccatttgggtaatgagcagaattcaa 1473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 8463 - 8384
Alignment:
Q  189 gcgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||| ||||||||||| || || ||||||  ||||||||||| ||||||| || || | ||||||||| |||||||||||    
T  8463 gcgtgagttaacatgcgtaagggtattttacacatttactttagaaatgagcagaaacgtttgggtaaagagcagaattc 8384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 364 - 442
Alignment:
Q  190 cgtaagttaacatgcatagggatattttggacatttactttggaaatgaacataaccatttgggtaatgagcagaattc 268  Q
    |||||||||||||||||| ||  |||| |||  |||||||||| ||||| |  |||||||||||||| ||||| |||||    
T  364 cgtaagttaacatgcataagggcatttgggatttttactttgggaatgagcgaaaccatttgggtaaagagcataattc 442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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