View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21557_low_13 (Length: 340)
Name: NF21557_low_13
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21557_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 83 - 257
Target Start/End: Complemental strand, 18813430 - 18813256
Alignment:
| Q |
83 |
agttctgcctggattcttgacaactccttctttatgttgtttcccaaaacctattaataaatcacaaacaaattgtttaatatatatgtccaaaattagc |
182 |
Q |
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| T |
18813430 |
agttctgcctggattcttgacaactccttctttatgttgtttcccaaaacctattaataaatcacaaacaaattgtttaatatatatgtccaaaattagc |
18813331 |
T |
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| Q |
183 |
tcaaacgatgagatgaagaataaatcatcaatttagttcctaaactatccgatttagttcataaaatatatgaaa |
257 |
Q |
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| T |
18813330 |
tcaaaggatgagatgaagaataaatcatcaatttagtccctaaactatccgatttagttcaaaaagcatatgaaa |
18813256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 18814024 - 18813951
Alignment:
| Q |
14 |
gaagatggtagagacctcagcttaattagtttcttagaggaagaagctgatatagaccttaggttaatcagttc |
87 |
Q |
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| T |
18814024 |
gaagatggtagagacctcagcttaattagtttcttagaggaagaagctgatatagacctcaggttaatcagttc |
18813951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 18812926 - 18812859
Alignment:
| Q |
256 |
aagaaaatttgtatgtaattaaaggtgcatcaatataatcaagcaataataatgagtcgagatgtttc |
323 |
Q |
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| T |
18812926 |
aagaaaatttgtatgtaagtaaaggtgcatcaatataatcaagcaataataatgagtcgagatgtttc |
18812859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 83 - 246
Target Start/End: Original strand, 48249511 - 48249675
Alignment:
| Q |
83 |
agttctgcctggattcttgacaactccttctttatgttgtttcccaaaacctattaat-aaatcacaaacaaattgtttaatatatatgtccaaaattag |
181 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48249511 |
agttctgtctggattcttgacaactccttctttatgttgtttcccaaaacctattaataaaatcacaaacaaattg-ttaatatatatgtccaaaattag |
48249609 |
T |
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| Q |
182 |
ctcaaacgatgaga-tgaagaataaatcatcaatttagttcctaaactatccgatttagttcataa |
246 |
Q |
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| T |
48249610 |
ctcaaagggtgagattaaagaataaatcatcaatttagtccctaaactatcctatttagttcataa |
48249675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 48248906 - 48248971
Alignment:
| Q |
22 |
tagagacctcagcttaattagtttcttagaggaagaagctgatatagaccttaggttaatcagttc |
87 |
Q |
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| T |
48248906 |
tagagacctcagcttaattagtttcttagaggaagaagctgatatggacctcagcttaatcagttc |
48248971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 40442133 - 40442066
Alignment:
| Q |
256 |
aagaaaatttgtatgtaattaaaggtgcatcaatataatcaagcaataataatgagtcgagatgtttc |
323 |
Q |
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||||||||||||| | || ||||| ||||||| |||||||||||||| ||||||||||||| |||||| |
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| T |
40442133 |
aagaaaatttgtacgcaagtaaagatgcatcagtataatcaagcaatgataatgagtcgaggtgtttc |
40442066 |
T |
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