View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21557_low_14 (Length: 335)
Name: NF21557_low_14
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21557_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 35631040 - 35630738
Alignment:
| Q |
18 |
tgatcaagattagacagtccaaaaaagtatattttataattcaaaataccaagtatgaatttggactgtccaatctttgatggaactgtcatctatatca |
117 |
Q |
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| T |
35631040 |
tgatcaagattagacagtccaaaaaattatattttataattcaaaataccaagtatgaatttggactgtccaatctttgatggaactgtcatctatatca |
35630941 |
T |
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| Q |
118 |
tctatgtcttaactgtgtgaatgcggggaatctaattttgaaattgcgatgaacttgtaatggctattgatttttactttttggtttgttgtagttgtag |
217 |
Q |
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| T |
35630940 |
tccatgtcttaactgtgtgaatgcggggaatctaattttgaaattgcgatgaacttgtaatggctattgatttttactttttggtttgttgtagttgtag |
35630841 |
T |
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| Q |
218 |
agaaaatggtaactagaaatgtggatcttcggtcagacacggtgacaaagccaactgaggcaatgagggctgctatggcaagtgctgaagttgacgatga |
317 |
Q |
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| T |
35630840 |
agaaaatggtaactagaaatgtggatcttcggtcagacacggtgacaaagccaactgaggcaatgagggctgctatggcaagtgctgaagttgacgatga |
35630741 |
T |
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| Q |
318 |
tgt |
320 |
Q |
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| T |
35630740 |
tgt |
35630738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 47826356 - 47826467
Alignment:
| Q |
209 |
tagttgtagagaaaatggtaactagaaatgtggatcttcggtcagacacggtgacaaagccaactgaggcaatgagggctgctatggcaagtgctgaagt |
308 |
Q |
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| T |
47826356 |
tagttgcagaaaaaatggtaactaggacagtggatcttcggtcagatacagtcacaaaaccgactgaaacaatgcgagttgctatggcaaacgctgaggt |
47826455 |
T |
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| Q |
309 |
tgacgatgatgt |
320 |
Q |
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| T |
47826456 |
cgatgatgatgt |
47826467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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