View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21557_low_15 (Length: 326)
Name: NF21557_low_15
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21557_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 20361344 - 20361244
Alignment:
| Q |
1 |
aaacacttgaccatcagaacgcctcgtatacataaagggtcgagggtcgttctcatacataagccctaattcctcatcatcactatactcagaatcttct |
100 |
Q |
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| T |
20361344 |
aaacacttgaccatcagaacgcctcgtatacataaatggtcgagggtcgttctcatacataagccctaattcctcatcatcactatactcagaatcttct |
20361245 |
T |
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| Q |
101 |
t |
101 |
Q |
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| T |
20361244 |
t |
20361244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 20359625 - 20359568
Alignment:
| Q |
266 |
gcaattccatcgtcgacattgaaacacggaagaaatgaatgaatcacaatcagcaatt |
323 |
Q |
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| T |
20359625 |
gcaattccatcgtcgacattgaaacacggaaggaatgaatgaatcacaatcagcaatt |
20359568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 20361129 - 20361085
Alignment:
| Q |
221 |
gttccgggtccgacttcacactttcttcgcagtatttggttgcgc |
265 |
Q |
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| T |
20361129 |
gttccgggtccgacttcacactttcttcgcagtatttgtttgcgc |
20361085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 32194451 - 32194401
Alignment:
| Q |
235 |
ttcacactttcttcgcagtatttggttgcgcgcaattccatcgtcgacatt |
285 |
Q |
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| T |
32194451 |
ttcacactttcttcgcagtatttcgttgcgcgcaattccatcgtccacatt |
32194401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 32194492 - 32194457
Alignment:
| Q |
69 |
attcctcatcatcactatactcagaatcttcttctt |
104 |
Q |
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| T |
32194492 |
attcctcataatcactatactcagaatcttcttctt |
32194457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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