View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21557_low_16 (Length: 307)
Name: NF21557_low_16
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21557_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 8e-95; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 9235219 - 9234946
Alignment:
| Q |
17 |
agttatggtacaagatgttgttgttcgaattcctaatgagatgagcaaggaagagagtctaattagatcagccattctcatgaaattaggtcagttgtga |
116 |
Q |
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| T |
9235219 |
agttatggttcaaggtgttgttgttcgaattcctaatgagatgagcaatgaagagagtctaattagatcagccattctcatgaaattaggtcagttgtga |
9235120 |
T |
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| Q |
117 |
gt-nnnnnnncaacccaaatcttcaaaagctataagagtttaattgccacccgnnnnnnncttgtgtcatctcatacaaaccaatggcttttaccattca |
215 |
Q |
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| T |
9235119 |
gtaaaaaaaacaacccaaatcttcaaaagctataagagtttaattgccatccg-aaaagacttgtctcatctcatacaaaccaatggcttttgccattca |
9235021 |
T |
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| Q |
216 |
tagtatcgaaaatattcctcgaacacaatttgctatcaacttatttgtatacaattccgacttttgtattatttc |
290 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||| |||| |
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| T |
9235020 |
tagtatcgaaaatattcctcgaacacaatttgttatcaacttatttgtatacggttccaacttttgtattgtttc |
9234946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 9212821 - 9212720
Alignment:
| Q |
17 |
agttatggtacaagatgttgttgttcgaattcctaatgagatgagcaaggaagagagtctaattagatcagccattctcatgaaattaggtcagttgtga |
116 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| |
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| T |
9212821 |
agttatggttcaagatgttgttgttcgaattcctaatgagatgaacaaggaagagagtttaattagatccgccattctcatgaaattaggtcagtagtga |
9212722 |
T |
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| Q |
117 |
gt |
118 |
Q |
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|| |
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| T |
9212721 |
gt |
9212720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 290
Target Start/End: Complemental strand, 9212711 - 9212601
Alignment:
| Q |
179 |
gtgtcatctcatacaaaccaatggcttttaccattcatagtatcgaaaatattcctcgaacacaatttgctatcaacttatttgtatacaattccgactt |
278 |
Q |
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||||||||||||||||| |||||||||| |||||||| || | ||| |||||| ||||||||||||||||||||| ||| | |||| | |||| ||| |
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| T |
9212711 |
gtgtcatctcatacaaatcaatggctttg-ccattcattgtgttgaagatattcttcgaacacaatttgctatcaatgtatgtatataaagttccaactg |
9212613 |
T |
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| Q |
279 |
ttgtattatttc |
290 |
Q |
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|||||||||||| |
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| T |
9212612 |
ttgtattatttc |
9212601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 9195225 - 9195308
Alignment:
| Q |
21 |
atggtacaagatgttgttgttcgaattcctaatgagatgagcaaggaagagagtctaattagatcagccattctcatgaaatta |
104 |
Q |
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||||| ||||||||| ||||| | |||||||||||||||| || |||||||| |||||||| || || ||||||||||||||| |
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| T |
9195225 |
atggttcaagatgttattgttaaagttcctaatgagatgagaaatgaagagagcctaattaggtctgcaattctcatgaaatta |
9195308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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