View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21557_low_18 (Length: 299)

Name: NF21557_low_18
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21557_low_18
NF21557_low_18
[»] chr8 (16 HSPs)
chr8 (8-278)||(9234636-9234907)
chr8 (143-193)||(9498932-9498982)
chr8 (124-193)||(2044678-2044747)
chr8 (118-219)||(5899494-5899596)
chr8 (143-196)||(5899233-5899286)
chr8 (154-192)||(23936313-23936351)
chr8 (143-197)||(29219360-29219414)
chr8 (155-192)||(7658637-7658674)
chr8 (155-192)||(7658833-7658870)
chr8 (17-98)||(9212472-9212556)
chr8 (154-211)||(12280324-12280381)
chr8 (155-192)||(31947889-31947926)
chr8 (155-192)||(34608620-34608657)
chr8 (155-192)||(44807316-44807353)
chr8 (154-219)||(45522406-45522471)
chr8 (156-192)||(41368387-41368423)
[»] chr3 (15 HSPs)
chr3 (120-219)||(16883749-16883849)
chr3 (143-219)||(3354900-3354976)
chr3 (143-213)||(3354772-3354842)
chr3 (119-219)||(43902530-43902630)
chr3 (143-197)||(33687627-33687681)
chr3 (119-219)||(50420836-50420937)
chr3 (122-193)||(49579153-49579225)
chr3 (119-193)||(15311837-15311911)
chr3 (121-219)||(33687929-33688028)
chr3 (154-192)||(17258172-17258210)
chr3 (154-192)||(36317279-36317317)
chr3 (154-192)||(51224960-51224998)
chr3 (143-220)||(33381533-33381610)
chr3 (155-192)||(45125130-45125167)
chr3 (140-219)||(26465987-26466067)
[»] chr2 (24 HSPs)
chr2 (119-216)||(31227106-31227204)
chr2 (119-219)||(14289264-14289364)
chr2 (154-219)||(35500306-35500371)
chr2 (155-192)||(35180527-35180564)
chr2 (154-197)||(23993896-23993939)
chr2 (154-192)||(23048324-23048362)
chr2 (154-192)||(28719351-28719389)
chr2 (155-192)||(2755191-2755228)
chr2 (155-192)||(10857374-10857411)
chr2 (155-192)||(10857606-10857643)
chr2 (155-192)||(11188341-11188378)
chr2 (155-192)||(12542398-12542435)
chr2 (123-208)||(13025532-13025617)
chr2 (160-213)||(13491776-13491829)
chr2 (155-192)||(16238147-16238184)
chr2 (155-192)||(23280872-23280909)
chr2 (155-192)||(28217114-28217151)
chr2 (155-192)||(28733225-28733262)
chr2 (155-192)||(32661676-32661713)
chr2 (155-192)||(35173055-35173092)
chr2 (155-192)||(36286395-36286432)
chr2 (155-192)||(41454783-41454820)
chr2 (155-211)||(3368707-3368763)
chr2 (119-194)||(3403509-3403585)
[»] chr1 (28 HSPs)
chr1 (123-211)||(13575125-13575213)
chr1 (119-193)||(51690441-51690516)
chr1 (120-219)||(39384542-39384642)
chr1 (124-193)||(29816413-29816482)
chr1 (120-192)||(367161-367234)
chr1 (123-196)||(39411891-39411963)
chr1 (120-219)||(10532214-10532313)
chr1 (143-197)||(84257-84311)
chr1 (120-197)||(1406601-1406679)
chr1 (143-217)||(1484640-1484714)
chr1 (120-219)||(29816118-29816215)
chr1 (115-192)||(31907934-31908012)
chr1 (154-192)||(37008251-37008289)
chr1 (154-192)||(50503735-50503773)
chr1 (112-196)||(83881-83966)
chr1 (155-192)||(6606941-6606978)
chr1 (154-219)||(10231091-10231156)
chr1 (155-192)||(15911944-15911981)
chr1 (155-192)||(21932029-21932066)
chr1 (155-192)||(22182657-22182694)
chr1 (155-192)||(26932617-26932654)
chr1 (143-220)||(39384261-39384337)
chr1 (155-192)||(40345572-40345609)
chr1 (155-192)||(50591592-50591629)
chr1 (155-192)||(52201400-52201437)
chr1 (143-219)||(1484393-1484469)
chr1 (152-212)||(10532479-10532539)
chr1 (163-219)||(13574860-13574916)
[»] chr7 (16 HSPs)
chr7 (120-219)||(24432335-24432435)
chr7 (119-219)||(35828347-35828448)
chr7 (118-197)||(27756262-27756342)
chr7 (121-219)||(35793375-35793474)
chr7 (152-219)||(43657810-43657877)
chr7 (154-192)||(30283440-30283478)
chr7 (155-219)||(9477168-9477232)
chr7 (154-192)||(42438018-42438056)
chr7 (155-192)||(9477432-9477469)
chr7 (155-192)||(20588396-20588433)
chr7 (155-192)||(29163135-29163172)
chr7 (155-192)||(36801605-36801642)
chr7 (155-192)||(40139564-40139601)
chr7 (155-192)||(40790912-40790949)
chr7 (155-192)||(43724597-43724634)
chr7 (155-192)||(48925946-48925983)
[»] chr6 (14 HSPs)
chr6 (120-197)||(13398384-13398458)
chr6 (148-219)||(2164672-2164743)
chr6 (148-219)||(2176305-2176376)
chr6 (143-219)||(1614837-1614913)
chr6 (148-219)||(12101672-12101743)
chr6 (154-192)||(11623193-11623231)
chr6 (155-219)||(1615014-1615078)
chr6 (155-192)||(2113000-2113037)
chr6 (155-192)||(4037073-4037110)
chr6 (143-220)||(10088106-10088183)
chr6 (155-192)||(24119527-24119564)
chr6 (155-192)||(31175571-31175608)
chr6 (120-191)||(2164419-2164490)
chr6 (120-191)||(2176052-2176123)
[»] chr4 (20 HSPs)
chr4 (124-219)||(30626587-30626682)
chr4 (134-208)||(3369861-3369935)
chr4 (155-193)||(6289470-6289508)
chr4 (155-192)||(4049364-4049401)
chr4 (118-194)||(11787060-11787136)
chr4 (118-194)||(11799227-11799303)
chr4 (154-195)||(16323011-16323052)
chr4 (120-193)||(30627014-30627088)
chr4 (118-192)||(49804338-49804412)
chr4 (155-192)||(1186693-1186730)
chr4 (155-192)||(10308605-10308642)
chr4 (155-192)||(19725863-19725900)
chr4 (155-192)||(40489246-40489283)
chr4 (112-192)||(47742222-47742303)
chr4 (124-193)||(49000598-49000667)
chr4 (155-192)||(49869660-49869697)
chr4 (155-192)||(55732929-55732966)
chr4 (143-191)||(5303794-5303842)
chr4 (155-211)||(44932569-44932625)
chr4 (132-208)||(54953735-54953810)
[»] chr5 (15 HSPs)
chr5 (150-200)||(22408780-22408830)
chr5 (120-193)||(38498118-38498192)
chr5 (120-219)||(11167872-11167972)
chr5 (148-194)||(36501428-36501474)
chr5 (120-186)||(20364681-20364748)
chr5 (143-197)||(12166828-12166882)
chr5 (154-220)||(34969111-34969177)
chr5 (154-192)||(38163657-38163695)
chr5 (143-173)||(38498266-38498296)
chr5 (154-192)||(42169408-42169446)
chr5 (155-192)||(8006254-8006291)
chr5 (155-192)||(8714193-8714230)
chr5 (155-192)||(10331991-10332028)
chr5 (155-192)||(39573767-39573804)
chr5 (155-211)||(15204253-15204309)
[»] scaffold0006 (2 HSPs)
scaffold0006 (138-211)||(161732-161805)
scaffold0006 (153-211)||(162266-162324)
[»] scaffold1088 (1 HSPs)
scaffold1088 (124-208)||(2096-2180)
[»] scaffold0286 (2 HSPs)
scaffold0286 (148-219)||(17666-17737)
scaffold0286 (120-191)||(17919-17990)
[»] scaffold0172 (1 HSPs)
scaffold0172 (121-219)||(9852-9950)
[»] scaffold0092 (1 HSPs)
scaffold0092 (143-219)||(37807-37882)
[»] scaffold0854 (1 HSPs)
scaffold0854 (154-192)||(3369-3407)
[»] scaffold1301 (1 HSPs)
scaffold1301 (155-192)||(1289-1326)
[»] scaffold0028 (1 HSPs)
scaffold0028 (155-192)||(32251-32288)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 278
Target Start/End: Complemental strand, 9234907 - 9234636
Alignment:
Q  8 ttgtatttatattacttgtgtgaatagccgtcttaacttaggtcaataaagccttgcttttggctctaaattttaactatctgaattagtactaccttcg 107  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||    
T  9234907 ttgtatttatattactcgtgtgaatagccgtcttaacttaggtcaataaagccttgcttttggctctaaattttaactatcttaattagtattacctccg 9234808  T
Q  108 tcattatttataaggcttaatagtagttttga-ccactaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaag 206  Q
     ||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||  |||||||||||||||||||  || |   ||||    
T  9234807 ccattatttataaggcttaatagtagttttgatcccttaaatatcaggaagttgcgattttggccctctaacaaattaaaatacaatttagcctcctaag 9234708  T
Q  207 tattgccccttttaattagaagctttctttactttcaagttcttttaattctattctcattttcatttcgag 278  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9234707 tattgccctttttaattagaagctttctttactttcaagttcttttaattctattctcattttcatttcgag 9234636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 9498932 - 9498982
Alignment:
Q  143 ctaaatatcaggaagttgcgattttggccccataacaaattaaaatacaat 193  Q
    |||| ||||||||||||||||||||| |||||||||||| |||||||||||    
T  9498932 ctaagtatcaggaagttgcgattttgaccccataacaaaataaaatacaat 9498982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 2044678 - 2044747
Alignment:
Q  124 ttaatagtagttttgaccactaaatatcaggaagttgcgattttggccccataacaaattaaaatacaat 193  Q
    ||||||| ||||||| || |||| ||||| ||| ||||||||| |||||||||||||| |||||||||||    
T  2044678 ttaatagcagttttggcccctaagtatcatgaaattgcgatttcggccccataacaaaataaaatacaat 2044747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 5899596 - 5899494
Alignment:
Q  118 taaggcttaatagtagttttgacca-ctaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccct 216  Q
    ||||||||||||  ||||||| ||| |||| |||||  ||||||| ||||||| | ||||||||| ||||||||||| ||| ||  ||||||||||| ||    
T  5899596 taaggcttaataacagttttggccatctaagtatcacaaagttgcaattttggtctcataacaaaataaaatacaattcagccccctaagtattgcctct 5899497  T
Q  217 ttt 219  Q
    |||    
T  5899496 ttt 5899494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 5899233 - 5899286
Alignment:
Q  143 ctaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatcca 196  Q
    |||| ||||||||||||||||||| ||| || ||||||| ||||||||||||||    
T  5899233 ctaagtatcaggaagttgcgatttcggctccctaacaaaataaaatacaatcca 5899286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 23936313 - 23936351
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  23936313 gaagttgcgattttggccccctaactaattaaaatacaa 23936351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 29219414 - 29219360
Alignment:
Q  143 ctaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccag 197  Q
    |||| ||| |||||||||||||||| ||||| ||||||| ||| |||||||||||    
T  29219414 ctaagtattaggaagttgcgattttagccccctaacaaaataatatacaatccag 29219360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 7658637 - 7658674
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  7658637 aagttgtgattttggccccataactaattaaaatacaa 7658674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 7658870 - 7658833
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  7658870 aagttgcgattttggccccctaactaattaaaatacaa 7658833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 9212556 - 9212472
Alignment:
Q  17 tattacttgtgtgaatagccgtcttaac--ttaggtcaataaag-ccttgcttttggctctaaattttaactatctgaattagta 98  Q
    ||||||||||||| |||||||||| |||  |||||||| ||||| |||| |||| || |||||||||||||| | | ||||||||    
T  9212556 tattacttgtgtgcatagccgtctcaaccattaggtcagtaaagtccttactttaggatctaaattttaactgttttaattagta 9212472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 12280381 - 12280324
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattg 211  Q
    |||||||||||||||||||| |||  |||||||||||||  ||||||| || ||||||    
T  12280381 gaagttgcgattttggccccctaattaattaaaatacaaaacagtccactatgtattg 12280324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 31947889 - 31947926
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  31947889 aagttgcgattttggccccctaactaattaaaatacaa 31947926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 34608657 - 34608620
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  34608657 aagttgcgattttggccccctaactaattaaaatacaa 34608620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 44807353 - 44807316
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  44807353 aagttgcgattttggccccctaactaattaaaatacaa 44807316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 45522471 - 45522406
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    |||||||||||||| ||||| ||||||| ||||||||||  | | ||  |||||||||||||||||    
T  45522471 gaagttgcgattttagccccctaacaaaataaaatacaaaaccgccccctaagtattgcccctttt 45522406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 41368387 - 41368423
Alignment:
Q  156 agttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||||||| |||| |||||||||||||    
T  41368387 agttgcgattttggccccctaactaattaaaatacaa 41368423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 16883849 - 16883749
Alignment:
Q  120 aggcttaatagtagttttgaccac-taaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgccccttt 218  Q
    ||||||||||||| ||||| || | ||| |||||| |||||||||||||| |||| ||||||||||||||||||||||| ||  |||||| ||| |||||    
T  16883849 aggcttaatagtatttttggccccctaagtatcagaaagttgcgattttgaccccctaacaaattaaaatacaatccagccccctaagtactgctccttt 16883750  T
Q  219 t 219  Q
    |    
T  16883749 t 16883749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 3354976 - 3354900
Alignment:
Q  143 ctaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    |||| ||||| |||||||||||||||| ||| ||||||| ||||||||||||||| ||  |||||||||||| ||||    
T  3354976 ctaagtatcaagaagttgcgattttggtcccctaacaaaataaaatacaatccagccccctaagtattgcccatttt 3354900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 3354772 - 3354842
Alignment:
Q  143 ctaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcc 213  Q
    |||| ||||||||| |||||||||||||| | ||| ||| ||||||||||||||| || ||||||||||||    
T  3354772 ctaagtatcaggaaattgcgattttggcctcctaagaaaataaaatacaatccagccccttaagtattgcc 3354842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 43902530 - 43902630
Alignment:
Q  119 aaggcttaatagtagttttgaccactaaa-tatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctt 217  Q
    |||||||||||| ||||| |||| || || ||| ||||||||| |||||||||||| ||||||| |||||||||||| |  ||  |||||||||||||||    
T  43902530 aaggcttaatagcagttt-gaccccttaagtattaggaagttgtgattttggccccttaacaaaataaaatacaatctaaccccctaagtattgcccctt 43902628  T
Q  218 tt 219  Q
    ||    
T  43902629 tt 43902630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 33687627 - 33687681
Alignment:
Q  143 ctaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccag 197  Q
    |||| |||||| ||||||||||||| ||||| ||||||| |||||||||||||||    
T  33687627 ctaagtatcagaaagttgcgattttagccccctaacaaaataaaatacaatccag 33687681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 50420937 - 50420836
Alignment:
Q  119 aaggcttaatagtagttttgaccac-taaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctt 217  Q
    |||||||||||| ||||||| || | ||| ||| | ||||||||||||||| |||| ||||||| ||||| |||||| || ||  |||||||||||| ||    
T  50420937 aaggcttaatagcagttttggcctcctaagtattatgaagttgcgattttgaccccttaacaaaataaaacacaatctagccctctaagtattgcccatt 50420838  T
Q  218 tt 219  Q
    ||    
T  50420837 tt 50420836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 49579225 - 49579153
Alignment:
Q  122 gcttaatagtagttttgaccactaaa-tatcaggaagttgcgattttggccccataacaaattaaaatacaat 193  Q
    ||||||||| |||||||||| || || |||||| ||||||||||||| | ||| ||||||| |||||||||||    
T  49579225 gcttaatagcagttttgaccccttaagtatcagaaagttgcgattttagtcccctaacaaaataaaatacaat 49579153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 15311837 - 15311911
Alignment:
Q  119 aaggcttaatagtagttttga-ccactaaatatcaggaagttgcgattttggccccataacaaattaaaatacaat 193  Q
    |||||||||||| |||||||| || |||| ||| | |||||||| ||||||||||| ||||||| |||||||||||    
T  15311837 aaggcttaatagcagttttgatcctctaagtattatgaagttgcaattttggcccc-taacaaaataaaatacaat 15311911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 33688028 - 33687929
Alignment:
Q  121 ggcttaatagtagttttgac-cactaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    |||||||||| ||||||| | | |||| |||||| ||||||||||| || |||| ||||||| ||||||||||| ||| ||  |||||| |||| |||||    
T  33688028 ggcttaatagcagttttggctctctaagtatcagaaagttgcgattctgaccccctaacaaaataaaatacaattcagccccctaagtactgcctctttt 33687929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 17258210 - 17258172
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  17258210 gaagttgcgattttggacccctaacaaattaaaatacaa 17258172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 36317317 - 36317279
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  36317317 gaagttgtgattttggccccataactaattaaaatacaa 36317279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 51224960 - 51224998
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  51224960 gaagttgcgattttggccccctaactaattaaaatacaa 51224998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 33381533 - 33381610
Alignment:
Q  143 ctaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttta 220  Q
    |||| ||| |||||||||| |||||| |||| ||||||| ||||||||||| |||  |  |||||||||||| |||||    
T  33381533 ctaagtattaggaagttgcaattttgaccccttaacaaaataaaatacaattcagctccctaagtattgcccatttta 33381610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 45125130 - 45125167
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  45125130 aagttgcgattttggccccctaactaattaaaatacaa 45125167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 26465987 - 26466067
Alignment:
Q  140 ccactaaatatcaggaagttgcgattttgg-ccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    ||||||| ||| | |||||||||||||||| |||| ||||||| ||||||||||| ||| || |||  | |||||||||||    
T  26465987 ccactaagtattatgaagttgcgattttggcccccctaacaaaataaaatacaattcagccccttagattttgcccctttt 26466067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 31227204 - 31227106
Alignment:
Q  119 aaggcttaatagtagttttgaccac-taaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccct 216  Q
    |||| ||||||| ||||||| || | ||||||||||||||||||||||||| |||  ||||||| ||||||||||| ||| || |||||||||| ||||    
T  31227204 aaggtttaatagcagttttggcctcctaaatatcaggaagttgcgattttgaccctctaacaaaataaaatacaatacagccctttaagtattgtccct 31227106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 14289264 - 14289364
Alignment:
Q  119 aaggcttaatagtagttttgaccactaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgccccttt 218  Q
    |||||||||||| ||||||  |  |||| ||||| |||||||||||||||||||| ||||||| |||||||||||  || || ||||||| |||| ||||    
T  14289264 aaggcttaatagcagtttttcctcctaagtatcatgaagttgcgattttggccccctaacaaaataaaatacaatttagccccttaagtactgcctcttt 14289363  T
Q  219 t 219  Q
    |    
T  14289364 t 14289364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 35500371 - 35500306
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    |||||||||||||||||||| ||||||| ||||||||||  | | || ||||||||||||||||||    
T  35500371 gaagttgcgattttggccccctaacaaaataaaatacaaaaccgccccttaagtattgcccctttt 35500306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 35180564 - 35180527
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  35180564 aagttgcgattttggccccctaacaaattaaaatacaa 35180527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 23993939 - 23993896
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaatccag 197  Q
    |||||||| ||||||||||| ||||||| |||||||||||||||    
T  23993939 gaagttgcaattttggccccctaacaaaataaaatacaatccag 23993896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 23048324 - 23048362
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  23048324 gaagttgcgattttggccccctaactaattaaaatacaa 23048362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 28719351 - 28719389
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  28719351 gaagttgcgattttggccccctaactaattaaaatacaa 28719389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 2755228 - 2755191
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  2755228 aagttgcgattttggccccctaactaattaaaatacaa 2755191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 10857374 - 10857411
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  10857374 aagttgcgattttggccccctaactaattaaaatacaa 10857411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 10857643 - 10857606
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  10857643 aagttgcgattttggccccctaactaattaaaatacaa 10857606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 11188341 - 11188378
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  11188341 aagttgcgattttggccccctaactaattaaaatacaa 11188378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 12542435 - 12542398
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  12542435 aagttgcgattttggccccctaactaattaaaatacaa 12542398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 13025532 - 13025617
Alignment:
Q  123 cttaatagtagttttgaccactaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagta 208  Q
    |||||||| |||||||| | |||||||| ||||||||| ||||||| |    ||||| | ||||||||||| |||||| |||||||    
T  13025532 cttaatagcagttttgatccctaaatattaggaagttgtgattttgactatctaacagaataaaatacaattcagtcccttaagta 13025617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 13491829 - 13491776
Alignment:
Q  160 gcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcc 213  Q
    |||||||||||||| ||||||| ||||||||||||||  ||  |||||||||||    
T  13491829 gcgattttggccccttaacaaaataaaatacaatccatccccctaagtattgcc 13491776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 16238147 - 16238184
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  16238147 aagttgcgattttggccccctaactaattaaaatacaa 16238184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 23280909 - 23280872
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  23280909 aagttgcgattttggccccctaactaattaaaatacaa 23280872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 28217151 - 28217114
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  28217151 aagttgcgattttggccccctaactaattaaaatacaa 28217114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 28733262 - 28733225
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  28733262 aagttgcgattttggccccttaactaattaaaatacaa 28733225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 32661713 - 32661676
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  32661713 aagttgcgattttggccccctaactaattaaaatacaa 32661676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 35173092 - 35173055
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  35173092 aagttgcgattttgaccccctaacaaattaaaatacaa 35173055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 36286432 - 36286395
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  36286432 aagttgcgattttggccccctaactaattaaaatacaa 36286395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 41454820 - 41454783
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  41454820 aagttgcgattttggccccttaactaattaaaatacaa 41454783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 3368707 - 3368763
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattg 211  Q
    |||||||||||||||| || |||| |||||||||||||  |||||| ||| ||||||    
T  3368707 aagttgcgattttggctccttaactaattaaaatacaaaacagtcccttatgtattg 3368763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 3403509 - 3403585
Alignment:
Q  119 aaggcttaatagtagttttgaccactaaa-tatcaggaagttgcgattttggccccataacaaattaaaatacaatc 194  Q
    |||||||||||| |||||||| | | ||| ||||||||| |||| |||||| || | ||||||| ||||||||||||    
T  3403509 aaggcttaatagcagttttgatctccaaagtatcaggaatttgcaattttgacctcctaacaaaataaaatacaatc 3403585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 13575213 - 13575125
Alignment:
Q  123 cttaatagtagtttt-gaccactaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattg 211  Q
    |||||||| |||||| | || |||| |||||||||| |||||||||||||| |||||||| ||||||||||||||| || ||||||||||    
T  13575213 cttaatagcagttttagccccctaagtatcaggaagatgcgattttggccc-ataacaaaataaaatacaatccagccccttaagtattg 13575125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 51690516 - 51690441
Alignment:
Q  119 aaggcttaatagtagttttgaccac-taaatatcaggaagttgcgattttggccccataacaaattaaaatacaat 193  Q
    ||||||||||||||||||||| | | |||||||| | ||||||||||||||||| | ||||||| |||||||||||    
T  51690516 aaggcttaatagtagttttgatctcctaaatatccgaaagttgcgattttggcctcgtaacaaaataaaatacaat 51690441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 39384642 - 39384542
Alignment:
Q  120 aggcttaatagtagttttga-ccactaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgccccttt 218  Q
    |||||||| ||||||||||  || |||| |||||||||||||||| ||||||| | ||| ||| ||||||||||||||| ||  |||||| ||||| |||    
T  39384642 aggcttaacagtagttttggtcccctaagtatcaggaagttgcgaatttggcctcctaataaaataaaatacaatccagccccctaagtactgccctttt 39384543  T
Q  219 t 219  Q
    |    
T  39384542 t 39384542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 29816482 - 29816413
Alignment:
Q  124 ttaatagtagttttgaccact-aaatatcaggaagttgcgattttggccccataacaaattaaaatacaat 193  Q
    |||||||||||||||||| || |||||||| |||||||||||||||| |||  |||||| |||||||||||    
T  29816482 ttaatagtagttttgaccccttaaatatcaagaagttgcgattttggtccc-caacaaaataaaatacaat 29816413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 367234 - 367161
Alignment:
Q  120 aggcttaatagtagttttga-ccactaaatatcaggaagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||| |||||||| || ||| || ||| || ||||||||||||||||| ||||||| ||||||||||    
T  367234 aggcttaatagcagttttgatcccctatatttcaagaggttgcgattttggccccctaacaaaataaaatacaa 367161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 39411963 - 39411891
Alignment:
Q  123 cttaatagtagttttgaccactaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatcca 196  Q
    |||||| | |||||||||| |||| ||| || |||||||||||||| |||| ||||||| ||||||||||||||    
T  39411963 cttaattgcagttttgacccctaagtataagaaagttgcgattttgacccc-taacaaaataaaatacaatcca 39411891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 219
Target Start/End: Original strand, 10532214 - 10532313
Alignment:
Q  120 aggcttaatagtagttttgaccac-taaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgccccttt 218  Q
    ||||||||||| |||||||||| | ||| ||| ||||||||||||||||| ||||  |||||| ||||||| ||||||  ||  ||||| ||||||||||    
T  10532214 aggcttaatagcagttttgaccccctaagtattaggaagttgcgattttgacccc-caacaaaataaaatataatccaaccccctaagttttgccccttt 10532312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 84311 - 84257
Alignment:
Q  143 ctaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccag 197  Q
    |||| |||||||||||||| |||||||| |  ||||||| |||||||||||||||    
T  84311 ctaagtatcaggaagttgcaattttggctctctaacaaaataaaatacaatccag 84257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 1406679 - 1406601
Alignment:
Q  120 aggcttaatagtagttttgacca-ctaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccag 197  Q
    ||||||||||||| ||||| ||  |||| ||||||||| ||||||||||| || | ||| ||| |||||||||||||||    
T  1406679 aggcttaatagtatttttggccctctaagtatcaggaaattgcgattttgacctcctaataaaataaaatacaatccag 1406601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 1484714 - 1484640
Alignment:
Q  143 ctaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctt 217  Q
    |||| ||| ||||||||| ||||||| |||| ||||||| ||||||||||| ||| ||  |||||| ||||||||    
T  1484714 ctaagtattaggaagttgtgattttgaccccctaacaaagtaaaatacaattcagccccctaagtactgcccctt 1484640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 219
Target Start/End: Original strand, 29816118 - 29816215
Alignment:
Q  120 aggcttaatagtagttttgaccac-taaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgccccttt 218  Q
    ||||||||||| | |||||||| | ||| |||||||||||||   |||||||||| ||||||| ||||||||||| ||| ||  |||||||| | |||||    
T  29816118 aggcttaatagcaattttgaccccctaagtatcaggaagttg---ttttggccccctaacaaaataaaatacaattcagccccataagtatttctccttt 29816214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 31908012 - 31907934
Alignment:
Q  115 ttataaggcttaatagtagttttgaccact-aaatatcaggaagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||| ||| ||||||| ||||||| ||||| |||||||||||||||| |||||||| |   ||||||| ||||||||||    
T  31908012 ttattagggttaatagcagttttggccacttaaatatcaggaagttgtgattttggtcatttaacaaaataaaatacaa 31907934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 37008251 - 37008289
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  37008251 gaagttgcgattttggccccctaacaaaataaaatacaa 37008289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 50503735 - 50503773
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  50503735 gaagttgcgattttggccccctaactaattaaaatacaa 50503773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 83881 - 83966
Alignment:
Q  112 tatttataaggcttaatagtagttttgacc-actaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatcca 196  Q
    |||||| |||| ||||||||||||||||||  |||| ||| || || |||| |||||| |||| | ||||| ||||||||||||||    
T  83881 tatttaaaaggtttaatagtagttttgaccttctaagtattagaaaattgcaattttgacccccttacaaaataaaatacaatcca 83966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 6606978 - 6606941
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  6606978 aagttgcgattttggccccctaactaattaaaatacaa 6606941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 10231156 - 10231091
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    |||||| ||||||||||||  ||||||| ||||||||||| ||||||  |||||| || |||||||    
T  10231156 gaagtttcgattttggccctctaacaaaataaaatacaattcagtcccctaagtactgtccctttt 10231091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 15911981 - 15911944
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  15911981 aagttgcgattttggccccctaactaattaaaatacaa 15911944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 21932066 - 21932029
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  21932066 aagttgcgattttggccccctaactaattaaaatacaa 21932029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 22182694 - 22182657
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  22182694 aagttgcgattttggccccctaactaattaaaatacaa 22182657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 26932617 - 26932654
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  26932617 aagttgcgattttggtcccataactaattaaaatacaa 26932654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 39384261 - 39384337
Alignment:
Q  143 ctaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttta 220  Q
    |||| |||||||||||||||| |||| ||| |||||||| |||||||||||| || ||  ||||||  ||||||||||    
T  39384261 ctaagtatcaggaagttgcgagtttgaccc-ataacaaaataaaatacaatcaagccccctaagtaccgcccctttta 39384337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 40345609 - 40345572
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  40345609 aagttgcgattttggcctcataacaaaataaaatacaa 40345572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 50591592 - 50591629
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  50591592 aagttgcgattttggcctcataactaattaaaatacaa 50591629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 52201400 - 52201437
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  52201400 aagttgcgattttggccccctaactaattaaaatacaa 52201437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 1484393 - 1484469
Alignment:
Q  143 ctaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    |||| |||| ||||||||||||||||||||  ||||||| ||||||| ||| ||| ||  ||||||||  |||||||    
T  1484393 ctaagtatctggaagttgcgattttggccctctaacaaaataaaatataattcagccccctaagtattagccctttt 1484469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 10532539 - 10532479
Alignment:
Q  152 aggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgc 212  Q
    |||||||| ||||||||||||   |||||| ||||||||||||||| ||  ||||||||||    
T  10532539 aggaagttacgattttggccctccaacaaaataaaatacaatccagccccctaagtattgc 10532479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 13574860 - 13574916
Alignment:
Q  163 attttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    ||||||||||| ||||||| ||||||||||| ||| || ||||||| | ||||||||    
T  13574860 attttggccccctaacaaaataaaatacaattcagccccttaagtactacccctttt 13574916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 219
Target Start/End: Original strand, 24432335 - 24432435
Alignment:
Q  120 aggcttaatagtagttttgacc-actaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgccccttt 218  Q
    ||||||||||| | |||||||| ||||| ||||| ||||||||||||||||| || ||| ||| ||||||||| ||||| ||  |||||| |||||||||    
T  24432335 aggcttaatagcaattttgacccactaagtatcaagaagttgcgattttggctccctaaaaaaataaaatacagtccagccccctaagtactgccccttt 24432434  T
Q  219 t 219  Q
    |    
T  24432435 t 24432435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 35828347 - 35828448
Alignment:
Q  119 aaggcttaatagtagttttgaccact-aaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctt 217  Q
    |||||||||||| |||||||||| || ||||||||| |||||||||||||| || | |||||||  |||||||||| ||| ||  ||||||  |||||||    
T  35828347 aaggcttaatagcagttttgacctcttaaatatcagaaagttgcgattttgacctcctaacaaaacaaaatacaattcagccccctaagtaccgcccctt 35828446  T
Q  218 tt 219  Q
    ||    
T  35828447 tt 35828448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 27756262 - 27756342
Alignment:
Q  118 taaggcttaatagtagttttgaccactaaa-tatcaggaagttgcgattttggccccataacaaattaaaatacaatccag 197  Q
    |||| |||||||| ||||||| || || || ||| ||| |||||||||||||||||| ||||||| |||||||||||||||    
T  27756262 taagacttaatagcagttttggccccttaagtattaggtagttgcgattttggccccctaacaaaataaaatacaatccag 27756342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 35793375 - 35793474
Alignment:
Q  121 ggcttaatagtagttttgaccac-taaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    |||||||||| ||||||| || | ||||| | |||||||||||||||| | ||| ||||||| ||||||||||| ||| || ||||||| || |||||||    
T  35793375 ggcttaatagcagttttggccccctaaattttaggaagttgcgattttaggcccctaacaaaataaaatacaattcagccccttaagtactgtccctttt 35793474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 43657877 - 43657810
Alignment:
Q  152 aggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    ||||||||||||||||||| || ||||||| ||||||||||| |||  | ||||||||| ||||||||    
T  43657877 aggaagttgcgattttggcaccctaacaaaataaaatacaattcagctctttaagtatttcccctttt 43657810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 30283440 - 30283478
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  30283440 gaagttgcgattttggccccataacaaaataaaatacaa 30283478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 9477168 - 9477232
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    ||||||||||||| ||||| ||||||| ||||||||||  | | || ||||||||||||||||||    
T  9477168 aagttgcgattttagccccttaacaaaataaaatacaaaactgccctttaagtattgcccctttt 9477232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 42438056 - 42438018
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  42438056 gaagttgcgattttggccccctaactaattaaaatacaa 42438018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 9477469 - 9477432
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  9477469 aagttgcgattttggccccctaacaaaataaaatacaa 9477432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 20588433 - 20588396
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  20588433 aagttgcgattttggccccctaactaattaaaatacaa 20588396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 29163135 - 29163172
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  29163135 aagttgcgattttggccccctaactaattaaaatacaa 29163172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 36801605 - 36801642
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  36801605 aagttgcgattttggccccttaactaattaaaatacaa 36801642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 40139564 - 40139601
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  40139564 aagttgcgattttggccccctaactaattaaaatacaa 40139601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 40790949 - 40790912
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  40790949 aagttgcgattttggccccctaactaattaaaatacaa 40790912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 43724597 - 43724634
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  43724597 aagttgcgattttggccccctaactaattaaaatacaa 43724634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 48925946 - 48925983
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  48925946 aagttgcgattttggccccctaactaattaaaatacaa 48925983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 197
Target Start/End: Original strand, 13398384 - 13398458
Alignment:
Q  120 aggcttaatagtagttttgaccactaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccag 197  Q
    ||||||||||  ||||||| || |||||||||| ||||||||||||||||   ||||||||| |||||||||||||||    
T  13398384 aggcttaataacagttttgtcccctaaatatcaagaagttgcgattttgg---cataacaaaataaaatacaatccag 13398458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 2164743 - 2164672
Alignment:
Q  148 tatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    ||||||||||||||||||||| | || ||||||| ||||||||||||||| ||  |||||| || |||||||    
T  2164743 tatcaggaagttgcgattttgacaccctaacaaaataaaatacaatccagccccctaagtactgtccctttt 2164672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 2176376 - 2176305
Alignment:
Q  148 tatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    ||||||||||||||||||||| | || ||||||| ||||||||||||||| ||  |||||| || |||||||    
T  2176376 tatcaggaagttgcgattttgacaccctaacaaaataaaatacaatccagccccctaagtactgtccctttt 2176305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 1614837 - 1614913
Alignment:
Q  143 ctaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    |||| ||| |||||||||||||| ||||| | ||||||| ||||||||||||||| ||  ||| |||||||| ||||    
T  1614837 ctaagtattaggaagttgcgattgtggcctcctaacaaaataaaatacaatccagccccctaaatattgcccatttt 1614913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 12101743 - 12101672
Alignment:
Q  148 tatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    |||||| |||||| |||||||||| | ||||||| ||||||||||||||| ||  |||||| ||||| ||||    
T  12101743 tatcagaaagttgtgattttggcctcctaacaaaataaaatacaatccagccccctaagtactgcccttttt 12101672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 11623193 - 11623231
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  11623193 gaagttgcgattttggccccctaactaattaaaatacaa 11623231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 1615078 - 1615014
Alignment:
Q  155 aagttgcgattttggcccca-taacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    |||||||||||||||||||  ||||||| ||||||||||||||| |   |||||||||||||||||    
T  1615078 aagttgcgattttggcccccctaacaaaataaaatacaatccag-cacctaagtattgcccctttt 1615014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 2113000 - 2113037
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||||||||||||| || ||||||||||    
T  2113000 aagttgcgattttggccccataactaactaaaatacaa 2113037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 4037073 - 4037110
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  4037073 aagttgcgattttggccccctaactaattaaaatacaa 4037110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 10088106 - 10088183
Alignment:
Q  143 ctaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttta 220  Q
    |||||||||| | |||| ||||||||||||| ||||| | |||||||||||  || ||  |||||| |||||||||||    
T  10088106 ctaaatatcacggagttacgattttggccccctaacagaataaaatacaatttagccctctaagtactgcccctttta 10088183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 24119527 - 24119564
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  24119527 aagttgcgattttggccccctaactaattaaaatacaa 24119564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 31175571 - 31175608
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  31175571 aagttgcgattttggccccctaactaattaaaatacaa 31175608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 2164419 - 2164490
Alignment:
Q  120 aggcttaatagtagttttga-ccactaaatatcaggaagttgcgattttggccccataacaaattaaaataca 191  Q
    ||||||||||| |||||||| || |||| |||||  ||||||||||||||||||| ||| ||| |||||||||    
T  2164419 aggcttaatagcagttttgatcctctaagtatcataaagttgcgattttggcccc-taataaagtaaaataca 2164490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 2176052 - 2176123
Alignment:
Q  120 aggcttaatagtagttttga-ccactaaatatcaggaagttgcgattttggccccataacaaattaaaataca 191  Q
    ||||||||||| |||||||| || |||| |||||  ||||||||||||||||||| ||| ||| |||||||||    
T  2176052 aggcttaatagcagttttgatcctctaagtatcataaagttgcgattttggcccc-taataaagtaaaataca 2176123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 30626587 - 30626682
Alignment:
Q  124 ttaatagtagttttgaccactaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    ||||||| ||||||| || |||| ||||||||| |||||||||||||| | |||||||  |||||||||| ||||||  ||| || ||||||||||    
T  30626587 ttaatagcagttttggcccctaagtatcaggaaattgcgattttggcctcctaacaaaagaaaatacaattcagtcccctaaatactgcccctttt 30626682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 3369861 - 3369935
Alignment:
Q  134 ttttgaccactaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagta 208  Q
    ||||| || |||| ||||| |||||||||||||||||||| ||||||| ||||||||||| ||| || |||||||    
T  3369861 ttttgccccctaagtatcaagaagttgcgattttggccccctaacaaaataaaatacaattcagccccttaagta 3369935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 6289508 - 6289470
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaat 193  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  6289508 aagttgcgattttggccccataactaattaaaatacaat 6289470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 4049401 - 4049364
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||||||||||||| |||||||||||||    
T  4049401 aagttgcgattttggccccataactaattaaaatacaa 4049364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 11787060 - 11787136
Alignment:
Q  118 taaggcttaatagtagttttgaccac-taaatatcaggaagttgcgattttggccccataacaaattaaaatacaatc 194  Q
    ||||||||||||| ||||||| || | |||||||||| ||||||||||||| ||||| | ||||| ||||||||||||    
T  11787060 taaggcttaatagcagttttgccctcctaaatatcagaaagttgcgatttt-gccccctgacaaaataaaatacaatc 11787136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 11799227 - 11799303
Alignment:
Q  118 taaggcttaatagtagttttgaccac-taaatatcaggaagttgcgattttggccccataacaaattaaaatacaatc 194  Q
    ||||||||||||| ||||||| || | |||||||||| ||||||||||||| ||||| | ||||| ||||||||||||    
T  11799227 taaggcttaatagcagttttgccctcctaaatatcagaaagttgcgatttt-gccccctgacaaaataaaatacaatc 11799303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 16323011 - 16323052
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaatcc 195  Q
    ||||||||||||||| |||||||||||| |||||||||||||    
T  16323011 gaagttgcgattttgaccccataacaaaataaaatacaatcc 16323052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 30627088 - 30627014
Alignment:
Q  120 aggcttaatagtagttttgaccac-taaatatcaggaagttgcgattttggccccataacaaattaaaatacaat 193  Q
    ||||||||||| |||||| ||| | ||| |||||  ||||| |||||||| |||||||||||| |||||||||||    
T  30627088 aggcttaatagcagttttcaccccctaagtatcaaaaagttacgattttgaccccataacaaaataaaatacaat 30627014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 49804412 - 49804338
Alignment:
Q  118 taaggcttaatagtagttttgaccactaaatatcaggaagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||| | |||||||| ||| || ||| |||||||||||||||  ||| ||| ||| ||||||||||    
T  49804412 taaggcttaatagcaattttgacccctatatttcaagaagttgcgattttgatcccctaaaaaaataaaatacaa 49804338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 1186693 - 1186730
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  1186693 aagttgcgattttggccccctaactaattaaaatacaa 1186730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 10308642 - 10308605
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  10308642 aagttgcgattttggccccgtaactaattaaaatacaa 10308605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 19725900 - 19725863
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  19725900 aagttgcgattttggccccctaactaattaaaatacaa 19725863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 40489246 - 40489283
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  40489246 aagttgcgattttggccccctaactaattaaaatacaa 40489283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 47742222 - 47742303
Alignment:
Q  112 tatttataaggcttaatagtagttttgaccac-taaatatcaggaagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||| ||| ||||||| ||||||| |||| ||  | |||||||||||||||||||||||| |||| || |||| |||||    
T  47742222 tatttattaggtttaatagcagttttgtccacctatgtttcaggaagttgcgattttggccccctaactaaataaactacaa 47742303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 49000598 - 49000667
Alignment:
Q  124 ttaatagtagttttgaccactaaatatcaggaagttgcgattttggccccataacaaattaaaatacaat 193  Q
    |||||||||||||||||   ||||||| || |||||||||||||   | ||||||||| |||||||||||    
T  49000598 ttaatagtagttttgactcttaaatattagaaagttgcgattttattctcataacaaaataaaatacaat 49000667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 49869697 - 49869660
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  49869697 aagttgcgattttggccccttaactaattaaaatacaa 49869660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 55732966 - 55732929
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  55732966 aagttgcgattttggccccctaactaattaaaatacaa 55732929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 5303794 - 5303842
Alignment:
Q  143 ctaaatatcaggaagttgcgattttggccccataacaaattaaaataca 191  Q
    |||| ||||||||||||||||||||| |||| ||||||| |||| ||||    
T  5303794 ctaagtatcaggaagttgcgattttgaccccttaacaaaataaattaca 5303842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 44932569 - 44932625
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattg 211  Q
    ||||||||||||| || ||||||| |||||||||||||  |||||| ||| ||||||    
T  44932569 aagttgcgattttagctccataactaattaaaatacaaaacagtcccttatgtattg 44932625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 54953735 - 54953810
Alignment:
Q  132 agttttgaccactaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagta 208  Q
    ||||||| || |||| ||| |||||||||||||||| | ||||||||||| ||||||| ||| ||| || |||||||    
T  54953735 agttttgccccctaagtattaggaagttgcgatttt-gacccataacaaaataaaatataattcagccccttaagta 54953810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 22408830 - 22408780
Alignment:
Q  150 tcaggaagttgcgattttggccccataacaaattaaaatacaatccagtcc 200  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||||||||||    
T  22408830 tcaggaagttgcgattttgaccccctaacaaaataaaatacaatccagtcc 22408780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 38498118 - 38498192
Alignment:
Q  120 aggcttaatagtagttttgaccac-taaatatcaggaagttgcgattttggccccataacaaattaaaatacaat 193  Q
    ||||||||||| |||||||||||| ||| |||||||||||||| ||||| ||||| ||| ||| |||||||||||    
T  38498118 aggcttaatagcagttttgaccacctaagtatcaggaagttgcaattttcgccccctaaaaaaataaaatacaat 38498192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 219
Target Start/End: Original strand, 11167872 - 11167972
Alignment:
Q  120 aggcttaatagtagttttgaccactaaa-tatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgccccttt 218  Q
    |||||||||||||||||||||| || || |||||  || ||| |||||||||||| ||| ||| |||| ||||| |||| ||  ||||||||||||||||    
T  11167872 aggcttaatagtagttttgaccccttaagtatcacaaacttgtgattttggccccctaagaaaataaattacaacccagccctctaagtattgccccttt 11167971  T
Q  219 t 219  Q
    |    
T  11167972 t 11167972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 36501428 - 36501474
Alignment:
Q  148 tatcaggaagttgcgattttggccccataacaaattaaaatacaatc 194  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  36501428 tatcaggaagttgcgattttggtcccctaacaaaataaaatacaatc 36501474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 20364681 - 20364748
Alignment:
Q  120 aggcttaatagtagttttgaccac-taaatatcaggaagttgcgattttggccccataacaaattaaa 186  Q
    ||||||||||| ||||||| || | ||| ||||||||||||||||||||| |||| ||||||| ||||    
T  20364681 aggcttaatagcagttttgtccccctaagtatcaggaagttgcgattttgaccccctaacaaaataaa 20364748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 12166828 - 12166882
Alignment:
Q  143 ctaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccag 197  Q
    |||||||||| ||| |||| ||||| ||||| ||||||| |||||||||||||||    
T  12166828 ctaaatatcatgaaattgcaattttagccccctaacaaaataaaatacaatccag 12166882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 34969177 - 34969111
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttta 220  Q
    |||||||||||||||| ||||||||||| || |||||||  | | ||  ||||||||||||||||||    
T  34969177 gaagttgcgattttggacccataacaaaatataatacaaaaccgccccctaagtattgcccctttta 34969111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 38163695 - 38163657
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  38163695 gaagttgcgattttggccccctaactaattaaaatacaa 38163657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 173
Target Start/End: Complemental strand, 38498296 - 38498266
Alignment:
Q  143 ctaaatatcaggaagttgcgattttggcccc 173  Q
    |||||||||||||||||||||||||||||||    
T  38498296 ctaaatatcaggaagttgcgattttggcccc 38498266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 42169446 - 42169408
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  42169446 gaagttgcgattttagccccctaacaaattaaaatacaa 42169408  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 8006291 - 8006254
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||||||||||| | |||||||||||||    
T  8006291 aagttgcgattttggccccatacctaattaaaatacaa 8006254  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 8714230 - 8714193
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  8714230 aagttgcgattttggctccataactaattaaaatacaa 8714193  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 10331991 - 10332028
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  10331991 aagttgcgattttggccccaaaactaattaaaatacaa 10332028  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 39573804 - 39573767
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||||| || |||||||||||||    
T  39573804 aagttgcgattttggccccattactaattaaaatacaa 39573767  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 15204309 - 15204253
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattg 211  Q
    |||||||||||||| |||| |||| |||||||||||||  |||||| ||| ||||||    
T  15204309 aagttgcgattttgaccccctaactaattaaaatacaaaacagtcccttatgtattg 15204253  T

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Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 161805 - 161732
Alignment:
Q  138 gaccactaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattg 211  Q
    |||| |||| |||||| ||| || |||||||||||  ||||||| |||||||||||||||||| ||||||||||    
T  161805 gacccctaagtatcagtaagatgagattttggccctctaacaaaataaaatacaatccagtcctttaagtattg 161732  T

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Target: scaffold0006; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 162324 - 162266
Alignment:
Q  153 ggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattg 211  Q
    ||||| || |||||||||||| ||||||| ||||||||||| ||| || ||||||||||    
T  162324 ggaagatgtgattttggccccctaacaaaataaaatacaatacagccctttaagtattg 162266  T

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Target: scaffold1088 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold1088
Description:

Target: scaffold1088; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 2180 - 2096
Alignment:
Q  124 ttaatagtagttttgaccactaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagta 208  Q
    ||||||| ||||||| || ||||  || || ||||||||||||||||||| ||||||| ||||||||||| ||| || |||||||    
T  2180 ttaatagcagttttgtcctctaagcattagaaagttgcgattttggccccctaacaaaataaaatacaattcagccccttaagta 2096  T

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Target: scaffold0286 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 17666 - 17737
Alignment:
Q  148 tatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    ||||||||||||||||||||| | || ||||||| ||||||||||||||| ||  |||||| || |||||||    
T  17666 tatcaggaagttgcgattttgacaccctaacaaaataaaatacaatccagccccctaagtactgtccctttt 17737  T

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Target: scaffold0286; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 17990 - 17919
Alignment:
Q  120 aggcttaatagtagttttga-ccactaaatatcaggaagttgcgattttggccccataacaaattaaaataca 191  Q
    ||||||||||| |||||||| || |||| |||||  ||||||||||||||||||| ||| ||| |||||||||    
T  17990 aggcttaatagcagttttgatcctctaagtatcataaagttgcgattttggcccc-taataaagtaaaataca 17919  T

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Target: scaffold0172 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 9950 - 9852
Alignment:
Q  121 ggcttaatagtagttttgaccac-taaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    |||||||||| |||||||||| | | ||||| ||||||||||||||||| |||| ||| ||| |||||||||||| || ||  |||||||||||| ||||    
T  9950 ggcttaatagcagttttgacccccttaatattaggaagttgcgattttgacccc-taataaaataaaatacaatctagccctctaagtattgcccatttt 9852  T

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Target: scaffold0092 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 37807 - 37882
Alignment:
Q  143 ctaaatatcaggaagttgcgattttggccccataacaaattaaaatacaatccagtccattaagtattgcccctttt 219  Q
    |||| ||||||||||||||||||||| |||| ||||||| |||||||||||  || ||  |||||||||||| ||||    
T  37807 ctaagtatcaggaagttgcgattttgacccc-taacaaaataaaatacaatttagccccctaagtattgcccttttt 37882  T

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Target: scaffold0854 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 3407 - 3369
Alignment:
Q  154 gaagttgcgattttggccccataacaaattaaaatacaa 192  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  3407 gaagttgcgattttggccccctaactaattaaaatacaa 3369  T

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Target: scaffold1301 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 1326 - 1289
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  1326 aagttgcgattttggccccctaactaattaaaatacaa 1289  T

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Target: scaffold0028 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 32288 - 32251
Alignment:
Q  155 aagttgcgattttggccccataacaaattaaaatacaa 192  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  32288 aagttgcgattttggccccctaactaattaaaatacaa 32251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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