View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21557_low_2 (Length: 546)
Name: NF21557_low_2
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21557_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 166 - 536
Target Start/End: Original strand, 8588550 - 8588921
Alignment:
| Q |
166 |
tacgcagatgaatcgagcctcggaccttacaagactgttcagcgcctgagctcctcagagagagaatatcctctcagtcacagccataataacaaacaac |
265 |
Q |
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| T |
8588550 |
tacgcagatgaatcgagcctcagaccttacaagactgttcagcgcctgagctcctcagagagagaatatcctctcagtcacagccataataacaaacaac |
8588649 |
T |
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| Q |
266 |
tcaatgatcctaccccgcatttccctttcctcctttattccttgtgctaattatcaggtatctatcattgccacctccttcagtacagtcttttctgaaa |
365 |
Q |
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| T |
8588650 |
tcaatgatcctaccacgcatttccctttcctcctttattccctgtactaattatcaggtatctatcattgccacctccttcagtacagtcttttctgaaa |
8588749 |
T |
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| Q |
366 |
gctgaaacgaggaaactgactgtgcttaatgtctcagcacctccggatgtcctttccactgca-ccaaaactgtttaaccagatctctagctatagaaac |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
8588750 |
gctgaaacgaggaaactgactgtgcttaatgtctcagcacctccgcatgtcctttccactgcatcaaaaactgtttaaccagatctctagctatagaaac |
8588849 |
T |
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| Q |
465 |
atccattcctaccagtannnnnnnggttctataactgtgtcagcctccactttggtttgctgtatttctctg |
536 |
Q |
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| T |
8588850 |
atccattcctacgagtatttttttggttctataactgtgtcagcctccactttggtttgctgtatttctctg |
8588921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 8587741 - 8587844
Alignment:
| Q |
19 |
agagtgcattattttaatcaatacttctgaattctataattgttggtcctatcttttttatgctgctttctggttttcattcttgaataatcatatgttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8587741 |
agagtgcattattttaatcaatacttctgaattctataattgttggtcatatcttttttatgctgctttctggttttcattcttgaataatcataagttc |
8587840 |
T |
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| Q |
119 |
aatt |
122 |
Q |
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|||| |
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| T |
8587841 |
aatt |
8587844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 5363220 - 5363296
Alignment:
| Q |
72 |
ttttttatgctgctttctggttttcattcttgaataatcatatgttcaattgtatatcctcaggatgaatatcagtt |
148 |
Q |
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||||| |||||||||| || |||| |||||||||||||||||||| |||||||||||| ||||||||| |||| |
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| T |
5363220 |
tttttcatgctgctttgtgattttggttcttgaataatcatatgtttggttgtatatcctctcgatgaatattagtt |
5363296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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