View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21557_low_20 (Length: 250)
Name: NF21557_low_20
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21557_low_20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 30479990 - 30479747
Alignment:
| Q |
1 |
tttcattgtttcactcataatttttgaaaaagctaaaattttgataatacccacccataaagnnnnnnnnnnntacctcataagcttcagaaatttgctt |
100 |
Q |
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| T |
30479990 |
tttcattgtttcactcataatttttgaaaaagctaaaattttgataataccca----taaagaaaaaaaaa--tacctcataagcttcagaaatttgctt |
30479897 |
T |
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| Q |
101 |
gaacttagcttcagcatcttttttgttggttggatttttatcagggtgccatttcatggcaagtttcctataagctttcttgagttcatcgtcgttggca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30479896 |
gaacttagcttcagcatcttttttgttggttggatttttatcagggtgccatttcatggcaagtttcctataagctttcttgagttcatcgtcgttggca |
30479797 |
T |
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| Q |
201 |
ttcttatcaacctgcaagattttgtagtagtctacacccatttcttctct |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30479796 |
ttcttatcaacctgcaagattttgtagtagtctacacccatttcttctct |
30479747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 190
Target Start/End: Original strand, 4800341 - 4800453
Alignment:
| Q |
78 |
tcataagcttcagaaatttgcttgaacttagcttcagcatcttttttgttggttggatttttatcagggtgccatttcatggcaagtttcctataagctt |
177 |
Q |
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| T |
4800341 |
tcataagcttcagagattgtcttgaatttggcttcagcatctttcttgttattagggttcttatcaggatgccatttcatagcaagtttccgataagctt |
4800440 |
T |
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| Q |
178 |
tcttgagttcatc |
190 |
Q |
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| T |
4800441 |
tcttgagatcatc |
4800453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 241
Target Start/End: Complemental strand, 4142178 - 4142011
Alignment:
| Q |
74 |
tacctcataagcttcagaaatttgcttgaacttagcttcagcatcttttttgttggttggatttttatcagggtgccatttcatggcaagtttcctataa |
173 |
Q |
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||||||||||||||| || || | ||||| || |||||||| |||||||| || | ||||| ||||||||||||||||||||||||||||| || ||| |
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| T |
4142178 |
tacctcataagcttcggatatctctttgaatttggcttcagcgtcttttttatttgagggattcttatcagggtgccatttcatggcaagttttctgtaa |
4142079 |
T |
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| Q |
174 |
gctttcttgagttcatcgtcgttggcattcttatcaacctgcaagattttgtagtagtctacacccat |
241 |
Q |
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| T |
4142078 |
gctttcttcaactcttcttctgtggcattcttgtcaaccttcaaaatcttgtagtagtctacccccat |
4142011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 241
Target Start/End: Complemental strand, 38859346 - 38859183
Alignment:
| Q |
78 |
tcataagcttcagaaatttgcttgaacttagcttcagcatcttttttgttggttggatttttatcagggtgccatttcatggcaagtttcctataagctt |
177 |
Q |
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||||||||||| || |||||||| || || |||||||| ||||||||||| | || || |||||||| ||||| |||||||| ||||| || ||||||| |
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| T |
38859346 |
tcataagcttctgagatttgcttaaatttggcttcagcttcttttttgttattagggttcttatcaggatgccacttcatggcgagttttctgtaagctt |
38859247 |
T |
|
| Q |
178 |
tcttgagttcatcgtcgttggcattcttatcaacctgcaagattttgtagtagtctacacccat |
241 |
Q |
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|||| | |||||||| ||||| ||| ||||||||||| | ||||||||||| |||||||| |
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| T |
38859246 |
tcttcaagtcatcgtctttggcgttccgatcaacctgcagaagcttgtagtagtcaacacccat |
38859183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 4145778 - 4145639
Alignment:
| Q |
74 |
tacctcataagcttcagaaatttgcttgaacttagcttcagcatcttttttgttggttggatttttatcagggtgccatttcatggcaagtttcctataa |
173 |
Q |
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||||||||| |||||||| || | ||||| |||| |||||||| || || ||| ||||| || |||||||||||||||||||||||||| ||||| |
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| T |
4145778 |
tacctcatatgcttcagatatgagtttgaatttagtctcagcatcattcttattgtcaggattcttgtcagggtgccatttcatggcaagttttctatat |
4145679 |
T |
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| Q |
174 |
gctttcttgagttcatcgtcgttggcattcttatcaacct |
213 |
Q |
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| T |
4145678 |
gctttcttcaattcatcgtctgtggcattcttgtcaacct |
4145639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 248
Target Start/End: Original strand, 49917452 - 49917592
Alignment:
| Q |
108 |
gcttcagcatcttttttgttggttggatttttatcagggtgccatttcatggcaagtttcctataagctttcttgagttcatcgtcgttggcattcttat |
207 |
Q |
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|||||||| |||||||| ||| | || || || ||||||||||||||||| || | ||| ||||| |||||||| | ||||| || | ||||| |||| |
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| T |
49917452 |
gcttcagcttcttttttattgttagggttcttgtcagggtgccatttcatagccaattttctatatgctttcttcaaatcatcttctgtagcatttttat |
49917551 |
T |
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| Q |
208 |
caacctgcaagattttgtagtagtctacacccatttcttct |
248 |
Q |
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| |||| ||| || || ||||| || |||||||||| |||| |
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| T |
49917552 |
ccaccttcaaaatgttatagtaatccacacccattttttct |
49917592 |
T |
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