View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21557_low_21 (Length: 243)
Name: NF21557_low_21
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21557_low_21 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 6 - 167
Target Start/End: Original strand, 31943782 - 31943943
Alignment:
| Q |
6 |
agatggcagaaggaaatgagcaatagaggatccagatcccagtaaataactagaaaagaatttttggaaagaccttgagttcaattctacaagtgggaga |
105 |
Q |
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| T |
31943782 |
agatggcagaaggaaatgagaaatagaggatccagatcccggtaaataactagaaaagagtttttggaaagaccttgagttcaattctacaaagtgtaga |
31943881 |
T |
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| Q |
106 |
taaagaacaaaaagctaacaaaacaataaaaataaattcattcttttagaaaatatacatga |
167 |
Q |
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| T |
31943882 |
taaagaacaaaaagctaacaaaacaataaaaataaattcattctttaagaaaatatgcatga |
31943943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 15121472 - 15121398
Alignment:
| Q |
72 |
gaaagaccttgagttcaattctacaagtgggagataaagaacaaaaagctaacaaaacaataaaaataaattcatt |
147 |
Q |
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| T |
15121472 |
gaaagatcttgagttcaattctacaagt-ggaaataaagaacaaagagctaagaaagcaatcaaaataaactcatt |
15121398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 24945328 - 24945382
Alignment:
| Q |
189 |
tggagtattgaagggagaaacaagaagattcgcaaagggttgtggattatttggc |
243 |
Q |
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| T |
24945328 |
tggagtattgaaggtagaaataagaggatccgtaaggggttgtggattatttggc |
24945382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 9359526 - 9359471
Alignment:
| Q |
188 |
ttggagtattgaagggagaaacaagaagattcgcaaagggttgtggattatttggc |
243 |
Q |
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| T |
9359526 |
ttggagtattgaagggagaaacaagaagattcgcaaggggttgtggattatttggc |
9359471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 2308115 - 2308170
Alignment:
| Q |
188 |
ttggagtattgaagggagaaacaagaagattcgcaaagggttgtggattatttggc |
243 |
Q |
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| T |
2308115 |
ttggagtaatgaagggagaaacaagaggattcgtaaaggtttgtggatcatttggc |
2308170 |
T |
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