View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21557_low_22 (Length: 236)
Name: NF21557_low_22
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21557_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 33169995 - 33170193
Alignment:
| Q |
21 |
cgtgacagtgagaatcggttatttgtgaccaatacaccattgaagtaannnnnnnnncttgaagtttctagtgttgcattttccaatttatatagttttg |
120 |
Q |
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| T |
33169995 |
cgtgatagcgagaatcggttatttgtgaccaatacaccattgaagtatttttttttccttgaagtttctagtgttgcattttccaatttatatagttttg |
33170094 |
T |
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| Q |
121 |
cgtaagatataatcatgaaatcaaccaataatttgtataacatcttctgatcctgtctacaagccctagtgccccatttgaattgaaatgatttatgtc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33170095 |
cgtaagatataatcatgaaatcaaccaataatttgtataacatcttctgatcctgtctacaagtcctagtgccccatttgaattgaaatgatttatgtc |
33170193 |
T |
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