View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21557_low_24 (Length: 219)

Name: NF21557_low_24
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21557_low_24
NF21557_low_24
[»] chr7 (13 HSPs)
chr7 (37-188)||(1604407-1604558)
chr7 (27-202)||(2321203-2321378)
chr7 (27-188)||(1088661-1088822)
chr7 (27-188)||(1106010-1106171)
chr7 (27-188)||(1596067-1596228)
chr7 (27-188)||(1541458-1541619)
chr7 (27-188)||(1557402-1557563)
chr7 (27-188)||(1550692-1550853)
chr7 (37-202)||(2337610-2337775)
chr7 (27-202)||(2329701-2329876)
chr7 (37-188)||(3955450-3955601)
chr7 (19-187)||(9532045-9532212)
chr7 (27-187)||(30792316-30792477)
[»] scaffold0491 (2 HSPs)
scaffold0491 (27-154)||(1142-1269)
scaffold0491 (37-187)||(5996-6146)
[»] chr8 (4 HSPs)
chr8 (27-154)||(18739263-18739390)
chr8 (27-154)||(18744227-18744354)
chr8 (37-187)||(18749155-18749305)
chr8 (37-187)||(18723503-18723653)
[»] chr1 (2 HSPs)
chr1 (53-187)||(19250444-19250577)
chr1 (40-139)||(41668832-41668931)
[»] chr3 (1 HSPs)
chr3 (27-151)||(31658032-31658156)
[»] chr4 (3 HSPs)
chr4 (27-139)||(42977758-42977870)
chr4 (53-139)||(48712417-48712503)
chr4 (63-139)||(54122969-54123045)
[»] chr5 (3 HSPs)
chr5 (27-139)||(36620620-36620732)
chr5 (40-139)||(8873078-8873178)
chr5 (27-139)||(39102272-39102384)
[»] chr6 (1 HSPs)
chr6 (27-139)||(1257826-1257938)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 1604407 - 1604558
Alignment:
Q  37 cagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgtt 136  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  1604407 cagaaataaagcaccgacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgtt 1604506  T
Q  137 ctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaagg 188  Q
    ||||||||| |||||||| || |||||| | |||||||| | ||||||||||    
T  1604507 ctctgtcttgtatgatgatgtagaagccgtggaattcaagtggagaaaaagg 1604558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 2321203 - 2321378
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||||||| ||    
T  2321203 agaatattatcagaaataaagcaccgaaatattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctaccattacatggagagag 2321302  T
Q  127 gaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaaggctaaatgttgttaa 202  Q
    ||||||||||||| ||||| |||||||| |  || ||||| |||||||||| |||||||||||| |||||||||||    
T  2321303 gaagtttgttctccgtcttgtatgatgatgcagaggccatggaattcaattggagaaaaaggcttaatgttgttaa 2321378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 27 - 188
Target Start/End: Original strand, 1088661 - 1088822
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1088661 agaatattatcagaaataaagcacaaacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaag 1088760  T
Q  127 gaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaagg 188  Q
    |||| |||||||||||||| |||||||| || |||||  | |||||||||| ||||||||||    
T  1088761 gaagcttgttctctgtcttgtatgatgatgtagaagctgtggaattcaattggagaaaaagg 1088822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 27 - 188
Target Start/End: Original strand, 1106010 - 1106171
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  1106010 agaatattatcagaaataaagcaccgacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaag 1106109  T
Q  127 gaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaagg 188  Q
    ||||  |||||||| |||| |||||||| || |||||| | |||||||||| ||||| ||||    
T  1106110 gaagcctgttctctatcttgtatgatgatgtagaagccgtggaattcaattggagaacaagg 1106171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 27 - 188
Target Start/End: Original strand, 1596067 - 1596228
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  1596067 agaatattatcagaaataaagcaccgacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaag 1596166  T
Q  127 gaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaagg 188  Q
    ||||  ||||||||||||| |||||||| || |||||| | |||||||| | ||||| ||||    
T  1596167 gaagcctgttctctgtcttgtatgatgatgtagaagccgtggaattcaagtggagaacaagg 1596228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 188
Target Start/End: Complemental strand, 1541619 - 1541458
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  1541619 agaatattatcagaaataaagcaccgacatattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagag 1541520  T
Q  127 gaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaagg 188  Q
    |||| || ||||||||||| |||||||| || |||||| | |||||||| | ||| ||||||    
T  1541519 gaagcttattctctgtcttgtatgatgatgtagaagccgtggaattcaagtggaggaaaagg 1541458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 188
Target Start/End: Complemental strand, 1557563 - 1557402
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  ||||||||||||||  | |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  1557563 agaatattatcagaaataaagcacaaacatatcgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatatatcaatacatggagaaag 1557464  T
Q  127 gaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaagg 188  Q
    |||| |||||||||||||| |||||||| || |||||  | |||||||||| ||||||||||    
T  1557463 gaagcttgttctctgtcttgtatgatgatgtggaagctgtggaattcaattggagaaaaagg 1557402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 27 - 188
Target Start/End: Complemental strand, 1550853 - 1550692
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||||| ||    
T  1550853 agaatattgacagaaataaagcaccgacatattgtgaagcttcatggattctgcttgcacaagagaatcatgtttttgatctatcagtacatggagagag 1550754  T
Q  127 gaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaagg 188  Q
    |||| |||||| ||||||| ||||| || || |||||  | |||||||||| ||||||||||    
T  1550753 gaagcttgttcactgtcttgtatgacgatgtagaagctgtggaattcaattggagaaaaagg 1550692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 2337610 - 2337775
Alignment:
Q  37 cagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgtt 136  Q
    |||| |||||||||||| |||| ||||||||||||||||||||  | |||| |||||||||||||||||||||  | || ||||||||||| || |||||    
T  2337610 cagatataaagcaccgacatatcgtgaagctttatggattctgtctccacagaagaatcatgtttttgatctacgagtacatggagaaaggtagcttgtt 2337709  T
Q  137 ctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaaggctaaatgttgttaa 202  Q
    ||||| ||| |||||||||||||||||| | |||||||||| |||||||||| | |||||| ||||    
T  2337710 ctctggcttgtatgatgaagttgaagccgtggaattcaattggagaaaaagggttaatgttattaa 2337775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 2329701 - 2329876
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  |||| |||||||||||  |||| ||||||||||||||||||||  | |||| |||||||||||||||||||||  | || ||||||||||    
T  2329701 agaatattatcagatataaagcaccggcatatcgtgaagctttatggattctgtctccacagaagaatcatgtttttgatctacgagtacatggagaaag 2329800  T
Q  127 gaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaaggctaaatgttgttaa 202  Q
    | || |||||||||||||| |||||||||| ||||||| | |||||||||| |||||||||| | |||||| ||||    
T  2329801 gtagcttgttctctgtcttgtatgatgaaggtgaagccgtggaattcaattggagaaaaagggttaatgttattaa 2329876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 3955601 - 3955450
Alignment:
Q  37 cagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgtt 136  Q
    |||||||||||||| ||||||||||||||||||||||||| || ||||| |||||| | ||||||||||||||||| |||||||| |||||||| |||||    
T  3955601 cagaaataaagcacagaaatattgtgaagctttatggattttgtttgcataaaagagttatgtttttgatctatcagtatatggaaaaaggaagcttgtt 3955502  T
Q  137 ctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaagg 188  Q
    ||| |||||  ||||||| || ||||||||  ||||| ||| ||| ||||||    
T  3955501 ctccgtcttgcatgatgatgtcgaagccataaaattcgattggaggaaaagg 3955450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 9532212 - 9532045
Alignment:
Q  19 atgaagcaagaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatat 118  Q
    ||||||| ||||||||   | ||||||| |||  ||||||||| |||||||||||||| || ||| |||||||||||||||||||||||||||||||  |    
T  9532212 atgaagcgagaatattataaaaaataaatcacataaatattgttaagctttatggattatgattgtacaaaagaatcatgtttttgatctatcaatacgt 9532113  T
Q  119 ggagaaaggaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaag 187  Q
     ||||||||||||||||||||  | || |||||||| || ||||   | |||||||||| |||||||||    
T  9532112 -gagaaaggaagtttgttctcgtttttgtatgatgatgtagaagttgtggaattcaattggagaaaaag 9532045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 187
Target Start/End: Original strand, 30792316 - 30792477
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcac-aaaagaatcatgtttttgatctatcaatatatggagaaa 125  Q
    ||||||||  || |||||||||||  ||||||||| ||||||||| |||||||||||||| ||||||||| |||||||||||||||||||  | ||||||    
T  30792316 agaatattatcataaataaagcacataaatattgttaagctttatagattctgcttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaa 30792415  T
Q  126 ggaagtttgttctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaag 187  Q
     |||| | ||||| ||| || |||||||| || ||||   |  ||||||||| |||||||||    
T  30792416 agaagctagttctttgttttgtatgatgatgtagaagttgtgaaattcaattggagaaaaag 30792477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 1269 - 1142
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1269 agaatattatcagaaataaagcaccgacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaag 1170  T
Q  127 gaagtttgttctctgtcttatatgatga 154  Q
    |||| |||||||||||||| ||||||||    
T  1169 gaagcttgttctctgtcttgtatgatga 1142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 6146 - 5996
Alignment:
Q  37 cagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgtt 136  Q
    ||||||||||||||  | |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| || ||    
T  6146 cagaaataaagcacaaacatatcgtgaagctttatggtttctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttatt 6047  T
Q  137 ctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaag 187  Q
    ||||||||| |||||||| || |||||| |  ||||||| | |||||||||    
T  6046 ctctgtcttgtatgatgatgtagaagccctgcaattcaagtggagaaaaag 5996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 18739390 - 18739263
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18739390 agaatattatcagaaataaagcaccgacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaag 18739291  T
Q  127 gaagtttgttctctgtcttatatgatga 154  Q
    |||| |||||||||||||| ||||||||    
T  18739290 gaagcttgttctctgtcttgtatgatga 18739263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 18744354 - 18744227
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18744354 agaatattatcagaaataaagcaccgacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaag 18744255  T
Q  127 gaagtttgttctctgtcttatatgatga 154  Q
    |||| |||||||||||||| ||||||||    
T  18744254 gaagcttgttctctgtcttgtatgatga 18744227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 18749305 - 18749155
Alignment:
Q  37 cagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgtt 136  Q
    ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| || ||    
T  18749305 cagaaataaagcacaaacatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttatt 18749206  T
Q  137 ctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaag 187  Q
    ||||||||| |||||||| || |||||||| |||||||| | |||||||||    
T  18749205 ctctgtcttgtatgatgatgtagaagccatggaattcaagtggagaaaaag 18749155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 18723653 - 18723503
Alignment:
Q  37 cagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgtt 136  Q
    ||||||||||||||  | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| || ||    
T  18723653 cagaaataaagcacaaacatatagtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttatt 18723554  T
Q  137 ctctgtcttatatgatgaagttgaagccatcgaattcaattcgagaaaaag 187  Q
    ||||||||| |||||||| || ||||||||  ||||||| | |||||||||    
T  18723553 ctctgtcttgtatgatgatgtagaagccatgaaattcaagtggagaaaaag 18723503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 53 - 187
Target Start/End: Original strand, 19250444 - 19250577
Alignment:
Q  53 aaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgttctctgtcttatatgat 152  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |||| |||||||| || || ||||||    
T  19250444 aaatattgttaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacat-gaaaaatgaagcttgttctcggttttgtatgat 19250542  T
Q  153 gaagttgaagccatcgaattcaattcgagaaaaag 187  Q
    || || ||||   | |||||||||| |||||||||    
T  19250543 gatgtagaagttgtggaattcaattggagaaaaag 19250577  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 41668931 - 41668832
Alignment:
Q  40 aaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgttctc 139  Q
    ||||||||||   ||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||| ||| ||| | |||| ||||||||||||    
T  41668931 aaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaataatgtttttaatctatcgatacatgaaaaaagaaagtttgttctc 41668832  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 31658032 - 31658156
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  || ||||||||||   ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| | ||||    
T  31658032 agaatattatcaaaaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaag 31658131  T
Q  127 gaagtttgttctctgtcttatatga 151  Q
     |||||||||||| || ||||||||    
T  31658132 aaagtttgttctcggttttatatga 31658156  T

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Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 42977870 - 42977758
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  || ||||||||||   ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| | ||||    
T  42977870 agaatattatcaaaaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaag 42977771  T
Q  127 gaagtttgttctc 139  Q
     ||||||||||||    
T  42977770 aaagtttgttctc 42977758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 48712503 - 48712417
Alignment:
Q  53 aaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgttctc 139  Q
    ||||||||| |||||||||||||| |||||||||||||||||||| ||||  ||||||||||| ||| | |||| ||||||||||||    
T  48712503 aaatattgttaagctttatggattttgcttgcacaaaagaatcatattttcaatctatcaatacatgaaaaaagaaagtttgttctc 48712417  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 54122969 - 54123045
Alignment:
Q  63 aagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgttctc 139  Q
    |||||||||  ||| |||||||||||||||||||||||||| ||||||||||| ||| | |||| ||||||||||||    
T  54122969 aagctttatatattttgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctc 54123045  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 36620620 - 36620732
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  || ||||||||||   ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| | | ||    
T  36620620 agaatattatcaaaaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaagag 36620719  T
Q  127 gaagtttgttctc 139  Q
     ||||||||||||    
T  36620720 aaagtttgttctc 36620732  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 8873178 - 8873078
Alignment:
Q  40 aaataaagcaccgaaatattgtgaagctttatggattct-gcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaaggaagtttgttct 138  Q
    ||||||||||   ||||||| | |||||||||||||| | ||||||||||||||||||||||||| ||||||||||| ||| | |||| |||||||||||    
T  8873178 aaataaagcagataaatattattaagctttatggatttttgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttct 8873079  T
Q  139 c 139  Q
    |    
T  8873078 c 8873078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 39102384 - 39102272
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  || ||||||||||   ||||||||| |||||||||||||| |||||||||||||||| ||||||||| || |||||||| ||| | | ||    
T  39102384 agaatattatcaaaaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaagcatgtttttaatatatcaatacatgaaaagag 39102285  T
Q  127 gaagtttgttctc 139  Q
     ||||||||||||    
T  39102284 aaagtttgttctc 39102272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 1257826 - 1257938
Alignment:
Q  27 agaatattgccagaaataaagcaccgaaatattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatatatggagaaag 126  Q
    ||||||||  || ||||||||||   ||||||||| || ||||||| ||| || ||||||||||||||||||||||| ||||||||||| ||| | ||||    
T  1257826 agaatattatcaaaaataaagcagataaatattgttaaactttatgaattttgtttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaag 1257925  T
Q  127 gaagtttgttctc 139  Q
     ||||||||||||    
T  1257926 aaagtttgttctc 1257938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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