View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21557_low_3 (Length: 535)
Name: NF21557_low_3
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21557_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 107 - 523
Target Start/End: Original strand, 43174763 - 43175179
Alignment:
| Q |
107 |
gatgagttagtgatttatctcatatttatatttcaaaaatttacggtgtctgacaatgtcaaataaataacatgattatgtattactgtatgtgcaagtt |
206 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43174763 |
gatgagttagtgatttatcttatatttatatttcaaaaatttatggtgtctgacaatgtcaaataaataacatgattatgtattactgtatgtgcaagtt |
43174862 |
T |
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| Q |
207 |
ttggtagaaatccaaatctttgcacctcaggttcatgcaacaagaggaacagaaacaaggttttagttccattagtaacatcactcggtggagctttcat |
306 |
Q |
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| T |
43174863 |
ttggtagaaatccaaatctttgcacctcaggttcatgcaacaagaggaacaggaacaaggttttagttccattagtaacatcactcggtggagctttcat |
43174962 |
T |
|
| Q |
307 |
tacactagcagtagcaatgatttcttttcgtatatactacaagagacaccgaggtaggtttggctttctattctattgacattggtaggatccaaacaat |
406 |
Q |
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| T |
43174963 |
tacactagcagtagcaatgatttcttttcgtatatactacaagagacaccgaggtaggtttggctttctattctattgacattgataggatccaaacaat |
43175062 |
T |
|
| Q |
407 |
agaataaaaatagatgatttaattggtatgcaatttaaatctaaaaatattttacacagtcgactaattacacatcatcatcttaagtgtggtttttaag |
506 |
Q |
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| T |
43175063 |
agaataaaaatagatgatttaattggtatgcaatttaaatgtaaaaatattttacacagtcgactaattacacatcatcatcttaagtgtggtttttaag |
43175162 |
T |
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| Q |
507 |
ataatcgggatcaaagt |
523 |
Q |
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| T |
43175163 |
ataatcgggatcaaagt |
43175179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 108 - 463
Target Start/End: Original strand, 43165623 - 43165976
Alignment:
| Q |
108 |
atgagttagtgatttatctcatatttatatttcaaaaatttacggtgtctgacaatgtcaaataaataacatgattatgtattactgtatgtgcaagttt |
207 |
Q |
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| T |
43165623 |
atgagctagtgatttatatcataattatattacaaaaatgtaaaatatcagacaatataaaataaataacatgattttttattactgtaaatgcaagttt |
43165722 |
T |
|
| Q |
208 |
tggtagaaatccaaatctttgcacctcaggttcatgcaacaagaggaacagaaacaaggttttagttccattagtaacatcactcggtggagctttcatt |
307 |
Q |
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| T |
43165723 |
tggtggaaatccagatctttgctcctcaggttcatgcaataaaagtaatgggaataaggttgtagttccattggtaacatcaattggtggagctttcttg |
43165822 |
T |
|
| Q |
308 |
acactagcagtagcaatgatttcttttcgtatatactacaagagacaccgaggtaggtttggctttctattctattgacattggtaggatccaaacaata |
407 |
Q |
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| T |
43165823 |
atactagcagtagcagtgatttcttttcacatttacaatacgagacacagaggtacattttgttttctattctattgtctttgttgggagccaaaca--t |
43165920 |
T |
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| Q |
408 |
gaataaaaatagatgatttaattggtatgcaatttaaatctaaaaatattttacac |
463 |
Q |
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| T |
43165921 |
gtataaaaatataggatttaattgctatgtaatgtaaatttaaaaatcttttacac |
43165976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 115 - 356
Target Start/End: Complemental strand, 43222097 - 43221856
Alignment:
| Q |
115 |
agtgatttatctcatatttatatttcaaaaatttacggtgtctgacaatgtcaaataaataacatgattatgtattactgtatgtgcaagttttggtaga |
214 |
Q |
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|||||||||| ||||| ||||||| ||||||| || ||| || |||||| |||||||||||||| | |||| | |||||||| ||||||||||||| || |
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| T |
43222097 |
agtgatttatatcataattatattacaaaaatgtaaggtatcagacaatatcaaataaataacacggttatttgttactgtaaatgcaagttttggtgga |
43221998 |
T |
|
| Q |
215 |
aatccaaatctttgcacctcaggttcatgcaacaagaggaacagaaacaaggttttagttccattagtaacatcactcggtggagctttcattacactag |
314 |
Q |
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|||| | |||||||| ||||||||||||||||||| ||||| | || |||||| |||||||||| ||||||||| | |||||||||||| | | | ||| |
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| T |
43221997 |
aatcaagatctttgctcctcaggttcatgcaacaaaaggaatgggaataaggttgtagttccattggtaacatcaattggtggagctttcctgatattag |
43221898 |
T |
|
| Q |
315 |
cagtagcaatgatttcttttcgtatatactacaagagacacc |
356 |
Q |
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|||||||| |||||||||||| || ||| ||||||| |||| |
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| T |
43221897 |
cagtagcagcgatttcttttcgcatttacaacaagaggcacc |
43221856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43174674 - 43174621
Alignment:
| Q |
1 |
aggagttgtattggaattgatcctgctagctgatttccttccaagtttcttcgg |
54 |
Q |
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| T |
43174674 |
aggagttgtactggaattgatcctgctagctgatttccttccaagtttcttcgg |
43174621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 43174598 - 43174564
Alignment:
| Q |
77 |
ttactctttacatgctttcattctcaccaagatga |
111 |
Q |
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| T |
43174598 |
ttactctttacatgctttcattctcaccaagatga |
43174564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 43165529 - 43165478
Alignment:
| Q |
1 |
aggagttgtattggaattgatcctgctagctgatttccttccaagtttcttc |
52 |
Q |
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| T |
43165529 |
aggagttgtattggaattgctcctgataactgatttccttcaaggtttcttc |
43165478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 43222221 - 43222272
Alignment:
| Q |
1 |
aggagttgtattggaattgatcctgctagctgatttccttccaagtttcttc |
52 |
Q |
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| T |
43222221 |
aggagttgtattggaattgctcctgataactgatttccttcaaggtttcttc |
43222272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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