View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21557_low_8 (Length: 399)
Name: NF21557_low_8
Description: NF21557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21557_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 45129886 - 45129526
Alignment:
| Q |
18 |
caaacatgctttatttggaaacaccagttggagttggattttcttatgttaaaggtagttctgcttataccacaacagtaaatgacgacgaaacaggtat |
117 |
Q |
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| T |
45129886 |
caaacatgctttatttggaaacaccagctggagttggattttcttatgttaaaggtagttctgcttataccacaacagtaaatgacgacgaaacaggtat |
45129787 |
T |
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| Q |
118 |
tcattattattgaatctttttggtacttaaaatgtttcatctttagaaacttcttttaaatcctacttctataggaaaaa--gtagtatatcttatgttt |
215 |
Q |
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| T |
45129786 |
tcattattattgaatctttttggtactaaaaatgtttcatctttagaaacttcttttaaatcctacttctataggaaaaaaagtagtatatcttatgttt |
45129687 |
T |
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| Q |
216 |
ttatactttcttaggctttttaaaagtttagataaagataaaacagtgatttattgtaaaaatgtctctaacttttgtgtcaaactttacattattattc |
315 |
Q |
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| T |
45129686 |
ttatactttcttaggctttttaaaagtttagataaagataaaacagtgatttattgtaaaaatgtctctaacttttgtatcaaactttacattattattc |
45129587 |
T |
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| Q |
316 |
tccatgtcttattatctactcaaagtcaaacattaacatgttatatacttttgatatcagt |
376 |
Q |
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| T |
45129586 |
tccatgtcttattatctactcaaagtcaaacattaacatgttatatacttttgatatcagt |
45129526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 40281907 - 40281848
Alignment:
| Q |
18 |
caaacatgctttatttggaaacaccagttggagttggattttcttatgttaaaggtagtt |
77 |
Q |
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|||||||| | |||||||| |||||||||||||| || |||||||||| ||||||||||| |
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| T |
40281907 |
caaacatgttgtatttggagacaccagttggagtggggttttcttatgctaaaggtagtt |
40281848 |
T |
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