View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21558_high_1 (Length: 384)
Name: NF21558_high_1
Description: NF21558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21558_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 35379897 - 35380176
Alignment:
| Q |
18 |
agagtagcccccctccatttttactgaattaatctttcaccttctgctctttctttcttttagttaaagtatgttgtcacttaaaaagcagaatctttcc |
117 |
Q |
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| T |
35379897 |
agaggagcccccctccatttttactgaattaatctttcaccttctgctctttctttcttttagttaaagtatgttgtcacttaaaaagcagaatctttcc |
35379996 |
T |
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| Q |
118 |
aaaaaagaccatgcaaaaccaccatcaactaaaatgttgatagaatcttagcaaaatcaattatctgaaaaacctttcttattctannnnnnnnnnnnnn |
217 |
Q |
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| T |
35379997 |
aaaaaagaccatgcaaaaccaccatcaactaaaatgttgatagaatcttagcaaaatcaattatctgaaaaacctttcttattctattttttattttttt |
35380096 |
T |
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| Q |
218 |
cacctaaatgttcatatctaacagttggatgttgggggatcatcaaatgggccactgaaccctgcttgtaagtacactaa |
297 |
Q |
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| T |
35380097 |
cacctaaatgttcatatctaacagttggatgttgggggatcatcaaatgggccactgaaccctgcttgtaagtactctaa |
35380176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 313 - 375
Target Start/End: Original strand, 35380169 - 35380231
Alignment:
| Q |
313 |
tactctaacatttaaaagtctatgattaatagttaatacaaagccttatcattaatatatatt |
375 |
Q |
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| T |
35380169 |
tactctaacatttaaaagtctataattaatagttaatacaaagccttatcattaatatatatt |
35380231 |
T |
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