View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21558_low_1 (Length: 510)
Name: NF21558_low_1
Description: NF21558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21558_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 5 - 459
Target Start/End: Original strand, 55011404 - 55011867
Alignment:
| Q |
5 |
gaggagcagagacagaagtggcgtgcgaattcaggtttgagtgatgggtggacttacaacactgatcttactggcggttactacgacgccggtgataaca |
104 |
Q |
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| T |
55011404 |
gaggaccagagacagaagtggcgtgcgaattcaggtttgagtgatgggtggacttacaacactgatcttactggcggttactacgacgccggtgataaca |
55011503 |
T |
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| Q |
105 |
tcaagtttgggtttccgatggcgtttacgacgacaatgttgtcatggagtgtgattgagtttggtgaaaacatgcctcctaatgaactcagaaacgcttt |
204 |
Q |
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| T |
55011504 |
tcaagtttgggtttccgatggcgtttacgacgacaatgttgtcatggagtgtgattgagtttggtgaaaacatgcctcctaatgaactcagaaacgcttt |
55011603 |
T |
|
| Q |
205 |
ggtcgcaattcgttggagtactgattatttgcttaagactgtttctcagtctaaccgcatttttgttcaggtatttttcattttactcaatcgttgggtt |
304 |
Q |
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| T |
55011604 |
ggtcgcaattcgttggagtactgattatttgcttaagactgtttctcagtctaaccgcatttttgttcaggtatttttcattttactcaatcgttgggtt |
55011703 |
T |
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| Q |
305 |
cactcactcacgg------acttttcac-tcttccttaatttannnnnnnggttgcataatttatttacggtattcata---aaatcaatttattgaaat |
394 |
Q |
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| T |
55011704 |
cactcactcacggtcacggacttttcacctcttccttaatttatttttttggttgcataatttatttacggtattcattcataaatcaatttattgaaat |
55011803 |
T |
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| Q |
395 |
ggaaaatcatcgtgcgttcttcctagataactgtgccggtttactttacatttacaatccgcttt |
459 |
Q |
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| T |
55011804 |
ggaaaatcatcgtgcgttcttcctagataactgtgccggttta-tttacatttacaatccgcttt |
55011867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 44151980 - 44152068
Alignment:
| Q |
80 |
ggttactacgacgccggtgataacatcaagtttgggtttccgatggcgtttacgacgacaatgttgtcatggagtgtgattgagtttgg |
168 |
Q |
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| T |
44151980 |
ggttactacgacgccggcgacaacataaagttcgggtttccgatggcgtttacaacgacgatgttagcttggagtgtgattgattttgg |
44152068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 39419599 - 39419534
Alignment:
| Q |
105 |
tcaagtttgggtttccgatggcgtttacgacgacaatgttgtcatggagtgtgattgagtttggtg |
170 |
Q |
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| T |
39419599 |
tcaagtttggttttcctatggcttttactaccactatgctttcatggagtgttattgagtttggtg |
39419534 |
T |
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