View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21558_low_2 (Length: 472)

Name: NF21558_low_2
Description: NF21558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21558_low_2
NF21558_low_2
[»] chr1 (7 HSPs)
chr1 (91-452)||(26884957-26885323)
chr1 (15-81)||(22580480-22580546)
chr1 (15-91)||(34059159-34059235)
chr1 (15-91)||(33054261-33054341)
chr1 (16-91)||(48666066-48666141)
chr1 (30-80)||(18391436-18391486)
chr1 (44-80)||(12372252-12372288)
[»] chr4 (2 HSPs)
chr4 (15-91)||(41501959-41502035)
chr4 (15-68)||(19140259-19140312)
[»] scaffold0010 (1 HSPs)
scaffold0010 (15-91)||(251420-251496)
[»] chr5 (1 HSPs)
chr5 (15-91)||(29635499-29635575)
[»] chr7 (1 HSPs)
chr7 (18-90)||(39052698-39052770)
[»] chr8 (1 HSPs)
chr8 (15-91)||(3695210-3695286)
[»] chr3 (1 HSPs)
chr3 (23-68)||(678830-678875)


Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 91 - 452
Target Start/End: Complemental strand, 26885323 - 26884957
Alignment:
Q  91 tctccatgactgaaatagtgactttgttatttttattgaaatgagatagctatttgataggagttaatttaacaaaaatatggaaaataaattagttgtg 190  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  26885323 tctccacgactgaaatagtgactttgttttttttattgaaatgagatagctatttgatgggagttaatttaacaaaaatatgaaaaataaattagttgtg 26885224  T
Q  191 ttttatgtcacacctatatttgtctacaattatttttgtcgaattgatacggaagaaccacggtctcaattgtgaggatagaaaaattgtgaaattttat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26885223 ttttatgtcacacctatatttgtctacaattatttttgtcgaattgatacggaagaaccacggtctcaattgtgaggatagaaaaattgtgaaattttat 26885124  T
Q  291 tttagctgaaacttttgtacaatagttcacactagaatttgtccatatagtataattacatttgtgacataagaagtgttatgttaactttggcagagcc 390  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||    
T  26885123 tttagttgaaatttttgtacaatagttcacactagaatttgtccatatagtataattacatttgtgatataagaagtgttatgctaactttggctgagcc 26885024  T
Q  391 aagaaatgtgcc-----tgaggacaaacaatcattaactagaaacaaaaatcgctataggagaactg 452  Q
    ||||||||||||     | |||  |||||||||||| ||||||||||||||||||||||||||||||    
T  26885023 aagaaatgtgcctcatatcaggttaaacaatcattagctagaaacaaaaatcgctataggagaactg 26884957  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 22580546 - 22580480
Alignment:
Q  15 cataggggtatatgtgaaaaaatttaattttgagggttggcaagtgcatcccctcagcactatgtgc 81  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||    
T  22580546 cataggggtatatgtgaaaaaattaaaatttgagggttggcaagtgcatcccctgaggactatgtgc 22580480  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 34059235 - 34059159
Alignment:
Q  15 cataggggtatatgtgaaaaaatttaattttgagggttggcaagtgcatcccctcagcactatgtgcctctgccact 91  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||| |  |||||||||  ||||||||    
T  34059235 cataggggtatatgtgaaaaaattaaaatttgagggttggcaagtgcatcccctgaagactatgtgcacctgccact 34059159  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 33054261 - 33054341
Alignment:
Q  15 cataggggtatatgtgaaaaaatttaattttgagggtt----ggcaagtgcatcccctcagcactatgtgcctctgccact 91  Q
    |||| ||||||||||||||   ||||||||||||||||    ||||||||||||||||||| |||||||||||| ||||||    
T  33054261 cataagggtatatgtgaaattttttaattttgagggttggttggcaagtgcatcccctcagtactatgtgcctccgccact 33054341  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 48666066 - 48666141
Alignment:
Q  16 ataggggtatatgtgaaaaaatttaattttgagggttggcaagtgcatcccctcagcactatgtgcctctgccact 91  Q
    |||||| ||||||||||||||  | | ||||||||||||||| |||||||||||| | | ||||| ||||||||||    
T  48666066 atagggatatatgtgaaaaaaaattaatttgagggttggcaaatgcatcccctcaccgcaatgtggctctgccact 48666141  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 18391486 - 18391436
Alignment:
Q  30 gaaaaaatttaattttgagggttggcaagtgcatcccctcagcactatgtg 80  Q
    ||||||| |||| ||||||||||||||||||||||||||||  ||||||||    
T  18391486 gaaaaaaattaaatttgagggttggcaagtgcatcccctcacaactatgtg 18391436  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 12372252 - 12372288
Alignment:
Q  44 ttgagggttggcaagtgcatcccctcagcactatgtg 80  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  12372252 ttgagggttggcaagtgcatcccctcaccacaatgtg 12372288  T

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Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 41501959 - 41502035
Alignment:
Q  15 cataggggtatatgtgaaaaaatttaattttgagggttggcaagtgcatcccctcagcactatgtgcctctgccact 91  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41501959 catagggatatatgtgaaaaaatttaattttgagggttggcaagtgcatcccctcagcactatgtgcctccgccact 41502035  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 19140312 - 19140259
Alignment:
Q  15 cataggggtatatgtgaaaaaatttaattttgagggttggcaagtgcatcccct 68  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  19140312 cataggggtatatgtgaaaaaattaaaatttgagggttggcaagtgcatcccct 19140259  T

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Target: scaffold0010 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 251420 - 251496
Alignment:
Q  15 cataggggtatatgtgaaaaaatttaattttgagggttggcaagtgcatcccctcagcactatgtgcctctgccact 91  Q
    ||||||| ||||||||||||||   |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  251420 catagggatatatgtgaaaaaaagaaattttgagggttggcaagtgcatcccctcggcactatgtgcctctgccact 251496  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 29635575 - 29635499
Alignment:
Q  15 cataggggtatatgtgaaaaaatttaattttgagggttggcaagtgcatcccctcagcactatgtgcctctgccact 91  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||| |||| ||||||    
T  29635575 cataggggtatatatgaaaaaatttaattttgaaggttggcaagtgcatcccctcatcactatgtacctccgccact 29635499  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 39052698 - 39052770
Alignment:
Q  18 aggggtatatgtgaaaaaatttaattttgagggttggcaagtgcatcccctcagcactatgtgcctctgccac 90  Q
    ||||||| ||||||||||  | ||  ||||||||||||||||||||||||||||||||||||||||| |||||    
T  39052698 aggggtacatgtgaaaaagataaaaattgagggttggcaagtgcatcccctcagcactatgtgcctccgccac 39052770  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 3695210 - 3695286
Alignment:
Q  15 cataggggtatatgtgaaaaaatttaattttgagggttggcaagtgcatcccctcagcactatgtgcctctgccact 91  Q
    ||||||||||| |||||||||  | ||  ||||| |||||||||||||||  |||||||||||||||||||||||||    
T  3695210 cataggggtatttgtgaaaaagataaaaattgagagttggcaagtgcatcttctcagcactatgtgcctctgccact 3695286  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 678830 - 678875
Alignment:
Q  23 tatatgtgaaaaaatttaattttgagggttggcaagtgcatcccct 68  Q
    |||||||||||||||| || ||||||||||||||| || |||||||    
T  678830 tatatgtgaaaaaattaaaatttgagggttggcaaatgtatcccct 678875  T

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