View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21558_low_4 (Length: 334)
Name: NF21558_low_4
Description: NF21558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21558_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 49985829 - 49985525
Alignment:
| Q |
16 |
catatcggaatgtcgcttgtaatcacatacattcacttctattttcacaaatcgttactagtgtatacttgttggcgttgtgtccggtgtacattttagt |
115 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
49985829 |
catatccgaatgtcgcttgtaatcacatacaatcacttctattttcacaaatcgttactagtgtatacttgttggcgtcgtatccggtgtacattttagt |
49985730 |
T |
|
| Q |
116 |
gtaaatgcttcttagcaaacactacaaaaattaagtaatacgtacataaattgtgaattagaaactttcatgtcttgtaacttaacgaagccagaaccaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49985729 |
gtaaatgcttcttagcaaacactacaaaaattaagtaatac----ataaattgtgaattagaaactttcgtgtcttgtaacttaacgaagccagaaccaa |
49985634 |
T |
|
| Q |
216 |
agggaacagatttttggcctaacgcctacaaaatttgcagtcacacattcatcgttagaaccaacttcacttttctgaatctgaagtctcactatcaaca |
315 |
Q |
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||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49985633 |
agggaacggattttgggcctaatgcctacaaaatttgcagtcacacattcatcgttagaaccaacttcacttttctgaatctgaagtctcactatcaaca |
49985534 |
T |
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| Q |
316 |
taatctgtg |
324 |
Q |
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||||||||| |
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| T |
49985533 |
taatctgtg |
49985525 |
T |
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