View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21558_low_6 (Length: 257)
Name: NF21558_low_6
Description: NF21558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21558_low_6 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 39470070 - 39470310
Alignment:
| Q |
1 |
cacacaaaacggaccccagtattctctacagcaagtgcgatcaccttaacctgatccccatcgaaaaaaccctgctcccgaagcagaggaaagctaccgt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
39470070 |
cacacaatacggaccccagtattctctacagcaagtgcgatccccttaacctgatcctcatcgaaaaaaccctgctcccgaagcagaggaaaactaccga |
39470169 |
T |
|
| Q |
101 |
ggaaggaggatgatcatcaagccacttgacaatatcgtcagaatcaacggtgcccttggttttgggctctaggtttaacatgggtcctattggatatatg |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
39470170 |
ggaaggaggctgatcatcaagccacttgacaatatcgtcagaatcaacggtgcccttggttttgggctctaggtttaatatgggtcctattggatatatg |
39470269 |
T |
|
| Q |
201 |
gataaaccagctagttcagaatgagagaaaaaggagtgaac |
241 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
39470270 |
gataaaccagctagttcgggatgagagaaaaaggagtgaac |
39470310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 39457605 - 39457847
Alignment:
| Q |
1 |
cacacaaaacggaccccagtattctctacagcaagtgcgatcaccttaacctgatccccatcgaaaaaaccc-tgctcccgaagcagaggaaagctaccg |
99 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||| ||| |||||||||||||||||||| || ||| |
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|
| T |
39457605 |
cacacaaatcggaccccagtattctctacagcaagggcgatctccttaacctgatcctcatcgaaaaaccccctgctcccgaagcagaggaaaacttccg |
39457704 |
T |
|
| Q |
100 |
tggaaggaggatgatcatcaagccacttgacaatatcgtcagaatcaacggtgcccttggttttgggctctaggtttaacatgggtcctattggatatat |
199 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| || || |||||||||||||| ||||||| || ||||||| |||||||| |
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|
| T |
39457705 |
aggaaggaggttgatcatcaagccacttgacaatatcgtcagaatcaatggcgctcttggttttgggcttggggtttaatattggtcctaccggatatat |
39457804 |
T |
|
| Q |
200 |
ggataaaccagctagttcagaatgagagaaaaaggagtgaacg |
242 |
Q |
| |
|
|| |||||| ||||| |||| |||||||| ||||||||||||| |
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|
| T |
39457805 |
gggtaaacctgctagatcaggatgagagacaaaggagtgaacg |
39457847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 39463880 - 39464081
Alignment:
| Q |
14 |
ccccagtattctctacagcaagtgcgatcaccttaacctgatccccatcgaaaaaacc-ctgctcccgaagcagaggaaagctaccgtggaaggaggatg |
112 |
Q |
| |
|
||||| ||||||| | ||||||||| ||| ||||||||||||| |||||||| |||| ||||||||||||||||||||| |||| | ||||||||| || |
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|
| T |
39463880 |
ccccactattctcaatagcaagtgcaatctccttaacctgatcttcatcgaaagaacctctgctcccgaagcagaggaaaactactgaggaaggaggttg |
39463979 |
T |
|
| Q |
113 |
atcatcaagccacttgacaatatcgtcagaatcaacggtgcccttggttttgggctctaggtttaacatgggtcctattggatatatggataaaccagct |
212 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||| || | ||||||||||||||||| ||||||| |||||||| | |||||||| |||||||||| |
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|
| T |
39463980 |
atcatcaagccacttgatgatatcatcataatcaatggggtccttggttttgggctctgggtttaatatgggtcccacaggatatatccgtaaaccagct |
39464079 |
T |
|
| Q |
213 |
ag |
214 |
Q |
| |
|
|| |
|
|
| T |
39464080 |
ag |
39464081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 39487328 - 39487087
Alignment:
| Q |
1 |
cacacaaaacggaccccagtattctctacagcaagtgcgatcaccttaacctgatccccatcgaaaaaaccc-tgctcccgaagcagaggaaagctaccg |
99 |
Q |
| |
|
|||||||||||| | ||| |||||| | |||| |||| ||| | |||||||||||| |||||||| | ||| |||||||||||||||||||| |||||| |
|
|
| T |
39487328 |
cacacaaaacgggctccacaattctcaatagcatgtgcaatctctttaacctgatcctcatcgaaagagcccctgctcccgaagcagaggaaaactaccg |
39487229 |
T |
|
| Q |
100 |
tggaaggaggatgatcatcaagccacttgacaatatcgtcagaatcaacggtgcccttggttttgggctctaggtttaacatgggtcctattggatatat |
199 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||| ||||| ||| |||||||||| ||||||||||| ||||||| | |||||| | |||||||| |
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|
| T |
39487228 |
aggaaggaggttgatcatcaagccacttgatgatatcatcagactcatcggtgcccttagttttgggctcggggtttaataagggtcccactggatatac |
39487129 |
T |
|
| Q |
200 |
ggataaaccagctagttcagaatgagagaaaaaggagtgaac |
241 |
Q |
| |
|
| ||| | ||||| |||| ||||||||||||||| ||||| |
|
|
| T |
39487128 |
cggtaattctgctagatcaggatgagagaaaaaggattgaac |
39487087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 212
Target Start/End: Complemental strand, 39472847 - 39472681
Alignment:
| Q |
47 |
taacctgatccccatcgaaaaaaccc-tgctcccgaagcagaggaaagctaccgtggaaggaggatgatcatcaagccacttgacaatatcgtcagaatc |
145 |
Q |
| |
|
||||||||||| | |||||| ||||| | || ||||||||||||||| |||| | ||| | ||| ||||||||||||||||||| || || || ||||| |
|
|
| T |
39472847 |
taacctgatcctcgtcgaaagaacccatacttccgaagcagaggaaaactactgaggatgcaggttgatcatcaagccacttgatgatgtcatcggaatc |
39472748 |
T |
|
| Q |
146 |
aacggtgcccttggttttgggctctaggtttaacatgggtcctattggatatatggataaaccagct |
212 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | ||||| |||| |||||||| | |||||||||| |
|
|
| T |
39472747 |
aacggtgcccttggttttgggctccaggttcagtatgggccctaccggatatataggtaaaccagct |
39472681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 39476362 - 39476191
Alignment:
| Q |
14 |
ccccagtattctctacagcaagtgcgatcaccttaacctgatccccatcgaaaaaaccc-tgctcccgaagcagaggaaagctaccgtggaaggaggatg |
112 |
Q |
| |
|
||||| ||||||| |||||| |||||||| ||||||||||||| |||| ||| ||||| | |||||||||||||||||| |||| | ||||||||| || |
|
|
| T |
39476362 |
ccccactattctcaacagcatgtgcgatctccttaacctgatcttcatcaaaataacccctactcccgaagcagaggaaaactacggaggaaggaggttg |
39476263 |
T |
|
| Q |
113 |
atcatcaagccacttgacaatatcgtcagaa------tcaacggtgcccttggttttgggctctaggtttaa |
178 |
Q |
| |
|
||||||||||||||| | | ||| |||||| ||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
39476262 |
atcatcaagccacttcattacatcatcagaatcagcgtcaacagtgccctttgttttgggctcaaggtttaa |
39476191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 188
Target Start/End: Complemental strand, 39461079 - 39460925
Alignment:
| Q |
35 |
gtgcgatcaccttaacctgatccccatcgaaaaaaccc-tgctcccgaagcagaggaaagctaccgtggaaggaggatgatcatcaagccacttgacaat |
133 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||| |||| | |||| |||||||||||| |||| | |||| |||| ||||||||||||||||||| || |
|
|
| T |
39461079 |
gtgcgatctccttaatctgatcctcatcgaaggtacccctagtcccaaagcagaggaaaactacggaggaaagaggttgatcatcaagccacttgatgat |
39460980 |
T |
|
| Q |
134 |
atcgtcagaatcaacggtgcccttggttttgggctctaggtttaacatgggtcct |
188 |
Q |
| |
|
||| || ||| |||| || ||||||||||||||||| |||||| ||||||||| |
|
|
| T |
39460979 |
atcatctgaaccaactgttcccttggttttgggctcagggtttataatgggtcct |
39460925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 39484113 - 39483980
Alignment:
| Q |
14 |
ccccagtattctctacagcaagtgcgatcaccttaacctgatccccatcgaaaaaaccc-tgctcccgaagcagaggaaagctaccgtggaaggaggatg |
112 |
Q |
| |
|
||||| ||||||| ||| || |||||||| ||||||||||||| |||| ||| ||||| | ||||| |||||||||||| |||| | ||||||||| || |
|
|
| T |
39484113 |
ccccactattctcaacaacatgtgcgatctccttaacctgatcttcatcaaaataacccctactcccaaagcagaggaaaactacggaggaaggaggttg |
39484014 |
T |
|
| Q |
113 |
atcatcaagccacttgacaatatcgtcagaatca |
146 |
Q |
| |
|
|| || ||||||||| | ||||| ||||||||| |
|
|
| T |
39484013 |
attatgaagccacttcattatatcatcagaatca |
39483980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 39451850 - 39451734
Alignment:
| Q |
14 |
ccccagtattctctacagcaagtgcgatcaccttaacctgatccccatcgaaaaaaccc-tgctcccgaagcagaggaaagctaccgtggaaggaggatg |
112 |
Q |
| |
|
||||| ||||||| | |||| |||||||| |||||||||| ||| |||||||| ||||| ||||||| |||||||||||| | || | ||| |||| || |
|
|
| T |
39451850 |
ccccactattctcaatagcatgtgcgatctccttaacctggtcctcatcgaaacaacccctgctcccaaagcagaggaaaacaacagaagaaagaggttg |
39451751 |
T |
|
| Q |
113 |
atcatcaagccacttga |
129 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
39451750 |
atcatcaagccagttga |
39451734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 241
Target Start/End: Complemental strand, 39455455 - 39455249
Alignment:
| Q |
36 |
tgcgatcaccttaacctgatccccatcgaaaaaaccct-gctcccgaagcagaggaaagctaccgtggaaggaggatgatcatcaagccacttgacaata |
134 |
Q |
| |
|
||||||| |||||||||||||| |||| ||| |||| | ||| |||||||| |||||| | || | |||| |||| ||||||||||||||||||| ||| |
|
|
| T |
39455455 |
tgcgatctccttaacctgatcctcatcaaaacaacctttgcttccgaagcaaaggaaaacgacggaggaaagaggttgatcatcaagccacttgatgata |
39455356 |
T |
|
| Q |
135 |
tcgtcagaatcaacggtgcccttggttttgggctctaggtttaacatgggtcctattggatat---atggataaaccagctagttcagaatgagagaaaa |
231 |
Q |
| |
|
|||||| |||| || |||||||||||||||| | |||| || ||||||| |||||| || | ||||| | || ||||| ||||||||||| |
|
|
| T |
39455355 |
---tcagaaccaacaatgtccttggttttgggctcaggacttaatataggtcctaccggatatataattggtaaacttgttaattcaggatgagagaaaa |
39455259 |
T |
|
| Q |
232 |
aggagtgaac |
241 |
Q |
| |
|
|||||||||| |
|
|
| T |
39455258 |
aggagtgaac |
39455249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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