View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21558_low_7 (Length: 249)
Name: NF21558_low_7
Description: NF21558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21558_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 49165402 - 49165629
Alignment:
| Q |
1 |
ctatttaatacaaaatgttgtttagtggcactacaatgcagcttgaataatcctctannnnnnnatgactcacgattgacaacactagaatcaagnnnnn |
100 |
Q |
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| T |
49165402 |
ctatttaatacaaaatgttgtttagtggcactacaatgcagcttgaataatcctctatttttttatgactcacgattgacaacactagaatcaagaaaaa |
49165501 |
T |
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| Q |
101 |
nnnntgcaactattgtagttttacaaatagacatagcttatttgtaaattgattatatacttttgttggcatacctcaggaacgaaggaaactcaaagaa |
200 |
Q |
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| T |
49165502 |
aa--tgcaactattgtagttttacaaatagacatagcttatttgtaaattgattatatacttttgttggcatacctcaggaacgaaggaaactcaaagaa |
49165599 |
T |
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| Q |
201 |
actcactgcagactaggccatgctccttca |
230 |
Q |
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||||||||||| |||||||||||||||||| |
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| T |
49165600 |
actcactgcaggctaggccatgctccttca |
49165629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 43751932 - 43752004
Alignment:
| Q |
125 |
aaatagacatagcttatttgtaaattgattatatacttttgttggcatacctcaggaacgaaggaaactcaaa |
197 |
Q |
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||||||| |||||||||||||||||| || | | ||||||||||||||| ||||| ||||| |||||||| |
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| T |
43751932 |
aaatagatgtagcttatttgtaaattgtttttttgcttttgttggcatactataggaaagaaggcaactcaaa |
43752004 |
T |
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