View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21558_low_8 (Length: 222)

Name: NF21558_low_8
Description: NF21558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21558_low_8
NF21558_low_8
[»] chr2 (7 HSPs)
chr2 (20-205)||(2320232-2320417)
chr2 (20-207)||(2292912-2293099)
chr2 (20-199)||(2309243-2309422)
chr2 (20-207)||(2302531-2302718)
chr2 (27-207)||(2329808-2329988)
chr2 (20-190)||(2326086-2326256)
chr2 (21-207)||(2350102-2350288)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 2320232 - 2320417
Alignment:
Q  20 catccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgctaaacatggtcctatcatcact 119  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2320232 catccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcact 2320331  T
Q  120 gtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2320332 gtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctc 2320417  T

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Target: chr2; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 2292912 - 2293099
Alignment:
Q  20 catccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgctaaacatggtcctatcatcact 119  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2292912 catccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcact 2293011  T
Q  120 gtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctctg 207  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||    
T  2293012 gtccatatcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactcatccatcttctctg 2293099  T

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Target: chr2; HSP #3
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 2309243 - 2309422
Alignment:
Q  20 catccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgctaaacatggtcctatcatcact 119  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  2309243 catccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcatt 2309342  T
Q  120 gtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccat 199  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2309343 gtccatatcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccat 2309422  T

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Target: chr2; HSP #4
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 2302531 - 2302718
Alignment:
Q  20 catccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgctaaacatggtcctatcatcact 119  Q
    |||||||||| |||||||  | || ||||||| |||| ||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2302531 catccccatcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcact 2302630  T
Q  120 gtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctctg 207  Q
     |||| ||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| ||||| |||||    
T  2302631 ctccacatcggttctcgaccttccattttcatcgatgaccatgctctggcccaccatgttctcgttcaaaactcagacatctactctg 2302718  T

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Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 27 - 207
Target Start/End: Original strand, 2329808 - 2329988
Alignment:
Q  27 atcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgctaaacatggtcctatcatcactgtccata 126  Q
    ||||||||||   |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||| ||||||||||||||||||| | |  |||    
T  2329808 atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata 2329907  T
Q  127 tcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctctg 207  Q
    ||||||||||||||||||||||||||  ||||| ||||||||| ||||| | |||||||||||||||  || |||||||||    
T  2329908 tcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaactcctccgtcttctctg 2329988  T

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Target: chr2; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 2326086 - 2326256
Alignment:
Q  20 catccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgctaaacatggtcctatcatcact 119  Q
    |||||||||||||||||   | |||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  2326086 catccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaat 2326185  T
Q  120 gtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaa 190  Q
     |  ||||||| ||  |||||||||||| ||||  ||||| ||||||||| ||||| |  |||||||||||    
T  2326186 cttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaa 2326256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 21 - 207
Target Start/End: Original strand, 2350102 - 2350288
Alignment:
Q  21 atccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgctaaacatggtcctatcatcactg 120  Q
    |||||||| |||||||   ||| || ||||| |||||||   |||||||| ||||||||| ||||||| |||||  | ||| |||||||||||||||||     
T  2350102 atccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc 2350201  T
Q  121 tccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccatcttctctg 207  Q
    || | ||| |||  ||||||||||||||||||  ||||||| |||| || ||||| | |||||||||||||||||||||||||||||    
T  2350202 tcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagccatcttctctg 2350288  T

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