View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21559_high_1 (Length: 745)
Name: NF21559_high_1
Description: NF21559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21559_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 239 - 732
Target Start/End: Complemental strand, 53661653 - 53661160
Alignment:
| Q |
239 |
gagaaacgataatattctttaatatattgtaattgatattcaatatatttattttaattgaattgttgcagtaaaattcagcacaggaatgttgtcaaat |
338 |
Q |
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| T |
53661653 |
gagaaacgataatattctttaatatattgtaattgatattcaatatatttattttaattgaattgttgcagtaaaattcagcacaggaatgttgtcaaat |
53661554 |
T |
|
| Q |
339 |
ttgttggtgcatgtacaaaacccccaaacctttgccttgtcacaggtcaaatttactaagtcacatattcttagttaaatttttcctattgattatgact |
438 |
Q |
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| T |
53661553 |
ttgttggtgcatgtacaaaacccccaaacctctgccttgtcacaggtcaaatttactaagtcacatattcttagttaaatttttcctattgattatgact |
53661454 |
T |
|
| Q |
439 |
ttgacaatgtattggaaaaagcaatgtcgatttcaatataacttgtttttatctcagaatatttgtctggtggaagtatgtacgaccttcttcataaaca |
538 |
Q |
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| T |
53661453 |
ttgacaatgtattggaaaaagcattgtcgatttcaatataacttgtttttatctcagaatatttgtctggtggaagtatgtacgaccttcttcataaaca |
53661354 |
T |
|
| Q |
539 |
gaaaactgtccttgctcttccatctttgctaaaagtagccattgatgtttctgaagggatgaaatatttgcatcagaatgatatcatacaccgggacctc |
638 |
Q |
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| T |
53661353 |
gaaaactgtccttgctcttccatctttgctaaaagtagccattgatgtttctgaagggatgaaatatttgcatcagaatgatatcatacaccgggacctc |
53661254 |
T |
|
| Q |
639 |
aagtcagctaatcttttgatagataagactggagtaagctcacattgattacttttaaattttactggcttattgtattttagttgatgatgtc |
732 |
Q |
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| T |
53661253 |
aagtcagctaatcttttgatagataagactggagtaagctcacattgattacttttaaattttactggcttattgtattttagttgatgctgtc |
53661160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 53661891 - 53661718
Alignment:
| Q |
1 |
acattatgtaatcaagatttagccatcaaagtcctgaagcaagagagtttggatgaaaatatacatagggagttttctcaggaagtatatatcctaaggt |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53661891 |
acattatgtaatcaagatttagctatcaaagtcctgaagcaagagagtttggatgaaaatatacatagggagttttctcaggaagtatatatcctaaggt |
53661792 |
T |
|
| Q |
101 |
tcgttccatcccactttccattcatcagtcccctaccatgaggccttttttctctggaattttcaatagtgttt |
174 |
Q |
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| T |
53661791 |
tcgttccatcccactttccattcatcagtcccctaccatgaggccttttttctctggaattttcaatagtgttt |
53661718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 293 - 360
Target Start/End: Complemental strand, 8450451 - 8450384
Alignment:
| Q |
293 |
taattgaattgttgcagtaaaattcagcacaggaatgttgtcaaatttgttggtgcatgtacaaaacc |
360 |
Q |
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| T |
8450451 |
taattgaactattgcagtaaaattcagcacaagaatgttatcaaatttattggtgcctgtacaaaacc |
8450384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 555 - 658
Target Start/End: Original strand, 9207854 - 9207957
Alignment:
| Q |
555 |
cttccatctttgctaaaagtagccattgatgtttctgaagggatgaaatatttgcatcagaatgatatcatacaccgggacctcaagtcagctaatcttt |
654 |
Q |
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||||||||||| ||||||||||||||||||||||| | || ||||| |||||||| || ||| |||| || ||| ||||||||||| | || |||||| |
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| T |
9207854 |
cttccatctttactaaaagtagccattgatgtttccaagggaatgaactatttgcaccaaaataatattattcacagggacctcaagactgccaatcttc |
9207953 |
T |
|
| Q |
655 |
tgat |
658 |
Q |
| |
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|||| |
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|
| T |
9207954 |
tgat |
9207957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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