View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21559_high_2 (Length: 669)

Name: NF21559_high_2
Description: NF21559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21559_high_2
NF21559_high_2
[»] chr6 (1 HSPs)
chr6 (1-669)||(5743916-5744584)


Alignment Details
Target: chr6 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 1 - 669
Target Start/End: Complemental strand, 5744584 - 5743916
Alignment:
Q  1 aatttatactctaaagctaataacagaaattaggtacccaaaaaatcagcaacggttctgccattggaaaatcttcccgttggacctctagggaaatcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5744584 aatttatactctaaagctaataacagaaattaggtacccaaaaaatcggcaacggttctgccattggaaaatcttcccgttggacctctagggaaatcaa 5744485  T
Q  101 ctccataaggtaagaaatttgctctcgctaaagttggaagaaaattattatttccattgtctaatagggagtccccaaaaacatataatgcgggtgcaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5744484 ctccataaggtaagaaatttgctctcgctaaagttggaagaaaattattattgccattgtctaatagggagtccccaaaaacatataatgcgggtgcaag 5744385  T
Q  201 gggaagggtaaagattggggagacgaggttaagggaaaagaatgagaaaaacataacaaaaatcatttgtttcattgtcattttcaatagataataaaac 300  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5744384 gggaagggtaaagattggggagaggaggttaagggaaaagaatgagaaaaacataacaaaaatcatttgtttcattgtcattttcaatagataataaaac 5744285  T
Q  301 actagaaggaaaaattggaaagatgagagtatgtatcaatatataaactatttctctcttgctctacttatagaagagatcttcaaaggatggtaacata 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5744284 actagaaggaaaaattggaaagatgagagtatgtatcaatatataaactatttctctcttgctctacttatagaagagatcttcaaaggatggtaacata 5744185  T
Q  401 aggcacatgaaatttagtttgtatcatgtgaggttcatgcatacacatatgtatgcgtaagtgttgcatgnnnnnnnnagcacaaaatagtaaaattctc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  5744184 aggcacatgaaatttagtttgtatcatgtgaggttcatgcatacacatatgtatgcgtaagtgttgcatgttttttttagcacaaaatagtaaaattctc 5744085  T
Q  501 gtgcattcgcatattgaggcgagaataatgtacacatttctgttgtgtatatagaatatggtgcagggaaggcaagctagttgcgtgctgttgctagata 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||    
T  5744084 gtgcattcgcatattgaggcgagaataatgtacacatttctgttgtgtatatagaatatggtgcagggaaagcaaactagttgcgtgttgttgctagata 5743985  T
Q  601 tgagttggtatgaaagataggtacaacttactggtttgtagcattgggtgcgtgaagatgtggaaggct 669  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  5743984 tgagttggtatgaaagataggtacgacttactggtttgtagcattgggtgcgtgaagatatggaaggct 5743916  T

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