View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21559_high_8 (Length: 357)
Name: NF21559_high_8
Description: NF21559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21559_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 5743631 - 5743947
Alignment:
| Q |
19 |
atattgtcgtgtatatgtctatcatttatgtgtacgataaatgctaataaaccgcgcacttgcatcaccacctgaaggaaacttggacccaagactttaa |
118 |
Q |
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| T |
5743631 |
atattgtcgtgtatatgtctgtcatttatgtgtatgataaatgctaataa---------ttgtgtaa--accttaaggaaacttggacccaaggctttaa |
5743719 |
T |
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| Q |
119 |
aaaagttgcccgaaaagatgattttcttcccagccatgaaagtttttaatgtcttcacaactgcatcacaacatcgatcatgatttcatcaccattgaaa |
218 |
Q |
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| T |
5743720 |
aaaagttgtccgaaaagatgattttcttcccagccatgaaagtttttaatgtcttcacaactgcatcacaacatggatcatgatttcatcaccattgaaa |
5743819 |
T |
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| Q |
219 |
cgtgatttcctgctatatcgaaaattgcaatgcgcacgcaatccaattgtaaaacctcgactaataattctttttacaataaacagactttgcggaagcc |
318 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5743820 |
cgtgatttcctgctatatcgaaaattgcaatgggcacacaatccaattgtaaaacctcgactaatgattctttttacaataaacagactttgcggaagcc |
5743919 |
T |
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| Q |
319 |
ttccacatcttcacgcaccctatgctac |
346 |
Q |
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||||| |||||||||||||| ||||||| |
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| T |
5743920 |
ttccatatcttcacgcacccaatgctac |
5743947 |
T |
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