View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21559_low_10 (Length: 252)
Name: NF21559_low_10
Description: NF21559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21559_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 4858209 - 4858432
Alignment:
| Q |
18 |
atttacacaagaacactgaagcaaataaacttcaactattccccagtgtgtgcacgcacgcagtttttgcagaaataagggaattaattattcttataca |
117 |
Q |
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| T |
4858209 |
atttacacaagaacactgaagcaaataaacttcaactattccccagtgtgtgcac----gcagtttttgcagaaataagggaattaattattcttataca |
4858304 |
T |
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| Q |
118 |
tttgttactaattcaaattattcgaatgtaatgtctgtgcgcaacaaatataatgtgtcagtcaccgtaaaaaatgatgaagctaaaaatgaaaactgag |
217 |
Q |
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| T |
4858305 |
tttgttactaattcaaattattcgaatgtaatgtctgtgcgcaacaaatataatgtgtcagtcaccgtaaaaaatgatgaagctaaaaatgaaaactgag |
4858404 |
T |
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| Q |
218 |
cgatctataaggattacccttcaattgc |
245 |
Q |
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| T |
4858405 |
cgatctataaggattacccttcaattgc |
4858432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 5176199 - 5176125
Alignment:
| Q |
77 |
gcagtttttgcagaaataagggaattaattattcttatacatttgttactaattcaaattattcgaatgtaatgt |
151 |
Q |
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| T |
5176199 |
gcagtttttgcacaaataagggtattaattaatcttatacatttgttaataattcaaataattcgactataatgt |
5176125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 229
Target Start/End: Original strand, 4838342 - 4838449
Alignment:
| Q |
120 |
tgttactaattcaaattattcgaatgtaatgtctgtgcgcaacaaatataatgtgtcagtcaccgtaaaaaatgatgaagctaaaaatgaaaactgagcg |
219 |
Q |
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| T |
4838342 |
tgttactggttcaaattattcgactataatgtgtgtgcacaacaaatataatgtgtccatgaccgt--gaaatgatgaagctaaaaataaaagccgagca |
4838439 |
T |
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| Q |
220 |
atctataagg |
229 |
Q |
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| T |
4838440 |
atctataagg |
4838449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 5176289 - 5176253
Alignment:
| Q |
22 |
acacaagaacactgaagcaaataaacttcaactattc |
58 |
Q |
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| T |
5176289 |
acacaagaacactgaagcatataaacttaaactattc |
5176253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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