View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21559_low_11 (Length: 230)
Name: NF21559_low_11
Description: NF21559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21559_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 15047527 - 15047311
Alignment:
| Q |
1 |
agtttatggattggataagagttgatggacacagaaatccatgacaaaaa-tacaaatattgggttagagacccattttctctagcaagtgacaatatta |
99 |
Q |
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| T |
15047527 |
agtttatggattggataagagttgatggacacagaaatccatgaaaaaaaatacaaatattgggttagagacccattttctctagcaagtgacaatatta |
15047428 |
T |
|
| Q |
100 |
act-cattataatcatgacttaccttatcctcttcactagnnnnnnngtggtttccattcatatgtatgtgatcttttgaagccattagaggagaacaca |
198 |
Q |
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| T |
15047427 |
acttcattataatcatgacttaccttatcctcttcactagtttttttgtggtttccattcatatgtgtgtgatcttttgaagccattagaggagaacaca |
15047328 |
T |
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| Q |
199 |
attattagcatgaaagt |
215 |
Q |
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| T |
15047327 |
attattagcatgaaagt |
15047311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 15214942 - 15215057
Alignment:
| Q |
9 |
gattggataagagttgatggacacagaaatccatgacaaaaatacaaatattgggttagagacccattttctctagcaagtgacaatattaactcattat |
108 |
Q |
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| T |
15214942 |
gattgaataagagttgatggacaccaaaatccatgaaaaaaatacatatattgagtctcacacccattttctctaggaagtgacaagattaggttattat |
15215041 |
T |
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| Q |
109 |
aatcatgacttacctt |
124 |
Q |
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| T |
15215042 |
aatcatggcttacctt |
15215057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 15066501 - 15066386
Alignment:
| Q |
9 |
gattggataagagttgatggacacagaaatccatgacaaaaatacaaatattgggttagagacccattttctctagcaagtgacaatattaactcattat |
108 |
Q |
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| T |
15066501 |
gattggataagagttgatggacaccaaaatccatgataaaaataaaaatattgagtatcacatccattttctctaggaagagacaagattaggttattat |
15066402 |
T |
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| Q |
109 |
aatcatgacttacctt |
124 |
Q |
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| T |
15066401 |
aatcatggattacctt |
15066386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 13033170 - 13033055
Alignment:
| Q |
9 |
gattggataagagttgatggacacagaaatccatgacaaaaatacaaatattgggttagagacccattttctctagcaagtgacaatattaactcattat |
108 |
Q |
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|||||||||||| |||||||||| |||||||||| ||||||||| ||||| || | ||||||||||||||| ||||||||| |||| | ||||| |
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| T |
13033170 |
gattggataagatatgatggacaccaaaatccatgaaaaaaatacatatattcagtctcacacccattttctctaggaagtgacaagattaggttattat |
13033071 |
T |
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| Q |
109 |
aatcatgacttacctt |
124 |
Q |
| |
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| T |
13033070 |
aatcatggattacctt |
13033055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 15052299 - 15052181
Alignment:
| Q |
9 |
gattggataagagttgatggacacagaaatccatgacaaaaatacaaatattgggttagagacc---cattttctctagcaagtgacaatattaactcat |
105 |
Q |
| |
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|||||||||| || ||||||||| |||| ||||| |||||||||||||||| ||| ||||| ||| |||||||| ||| ||||| |||| | || |
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| T |
15052299 |
gattggataaatgtagatggacaccaaaattcatgataaaaatacaaatattgacttacagacccatcatcttctctaggaagagacaagattaggttat |
15052200 |
T |
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| Q |
106 |
tataatcatgacttacctt |
124 |
Q |
| |
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|||||||||| ||||||| |
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| T |
15052199 |
tataatcatggattacctt |
15052181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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