View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21559_low_3 (Length: 615)
Name: NF21559_low_3
Description: NF21559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21559_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 5744584 - 5744115
Alignment:
| Q |
1 |
aatttatactctaaagctaataacagaaattaggtacccaaaaaatcagcaacggttctgccattggaaaatcttcccgttggacctctagggaaatcaa |
100 |
Q |
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| T |
5744584 |
aatttatactctaaagctaataacagaaattaggtacccaaaaaatcggcaacggttctgccattggaaaatcttcccgttggacctctagggaaatcaa |
5744485 |
T |
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| Q |
101 |
ctccataaggtaagaaatttgctctcgctaaagttggaagaaaattattatttccattgtctaatagggagtccccaaaaacatataatgcgggtgcaag |
200 |
Q |
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| T |
5744484 |
ctccataaggtaagaaatttgctctcgctaaagttggaagaaaattattattgccattgtctaatagggagtccccaaaaacatataatgcgggtgcaag |
5744385 |
T |
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| Q |
201 |
gggaagggtaaagattggggagacgaggttaagggaaaagaatgagaaaaacataacaaaaatcatttgtttcattgtcattttcaatagataataaaac |
300 |
Q |
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| T |
5744384 |
gggaagggtaaagattggggagaggaggttaagggaaaagaatgagaaaaacataacaaaaatcatttgtttcattgtcattttcaatagataataaaac |
5744285 |
T |
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| Q |
301 |
actagaaggaaaaattggaaagatgagagtatgtatcaatatataaactatttctctcttgctctacttatagaagagatcttcaaaggatggtaacata |
400 |
Q |
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| T |
5744284 |
actagaaggaaaaattggaaagatgagagtatgtatcaatatataaactatttctctcttgctctacttatagaagagatcttcaaaggatggtaacata |
5744185 |
T |
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| Q |
401 |
aggcacatgaaatttagtttgtatcatgtgaggttcatgcatacacatatgtatgcgtaagtgttgcatg |
470 |
Q |
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| T |
5744184 |
aggcacatgaaatttagtttgtatcatgtgaggttcatgcatacacatatgtatgcgtaagtgttgcatg |
5744115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 480 - 607
Target Start/End: Original strand, 5744724 - 5744851
Alignment:
| Q |
480 |
ttgtagaaacactacttttgtttagtaaaatctatatcgtaagtgggatgaaaaatgagtatattgttaatatatttcgaactcgtgatttttattgatt |
579 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5744724 |
ttgtagaaacactacttttgtttagtaaaatctatatcgtaagtgggatgaaaaatgagtatattgttaatatatttcgaactcgtgatttttattgatt |
5744823 |
T |
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| Q |
580 |
aatttttcttcttcttttgatgatgatg |
607 |
Q |
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| T |
5744824 |
aattttttttcttcttttgatgatgatg |
5744851 |
T |
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