View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21559_low_6 (Length: 439)
Name: NF21559_low_6
Description: NF21559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21559_low_6 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 39953800 - 39953376
Alignment:
| Q |
1 |
atccattgacacactcattcaacccctttcaatctagcaa---ggagtattatttcacttttcagttttttaatttaatgacaattggcaaaagaaaagt |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
39953800 |
atccattgacacactcattcaacccctttcaatctagcaatatggagtattatttcacttttcagttctttaatttaatgacaattgacaaaagaaaagt |
39953701 |
T |
|
| Q |
98 |
atagagtcactcaattcattcaattattatgaagaagttctgagtaagtatatgcactgcttaaattcaattattatgtttataaactaattcttcttaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
39953700 |
atagagtcactcaattcattcaattattatgaag---ttctgagtaagtatatgcactgcttgaattcaattattatgtttacaaactaattcttcttaa |
39953604 |
T |
|
| Q |
198 |
gggtatggacaccgacaacagtggaaccattacaattgaagaactcaagcaagggcttgcaaaacaagaaactagactgagtgaacaaaaagttaagcaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||| || |||||||| |
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| T |
39953603 |
gggtatggacaccgacaacagtggaaccattacaattgaagagctcaagcaagggcttgcaaaacaaggaactagattgagtgaacaagaaattaagcaa |
39953504 |
T |
|
| Q |
298 |
ttaatggaagctgtaagttatctacttgaacagttatagcttgttgctgcaagaaattcaggtgatgctagtgtaagaagtaaaaaggttgttggatacc |
397 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39953503 |
ttaatggaagctgtaagttatctgcttgaacagttatagcttgttgctgcaagaaattcaggtgatgctagtgtaagaagtaaaaaggttgttggatacc |
39953404 |
T |
|
| Q |
398 |
caggatgctagttacttggctgaagata |
425 |
Q |
| |
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||| |||||||||||||||||||||||| |
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| T |
39953403 |
cagaatgctagttacttggctgaagata |
39953376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 194 - 320
Target Start/End: Original strand, 38864252 - 38864378
Alignment:
| Q |
194 |
ttaagggtatggacaccgacaacagtggaaccattacaattgaagaactcaagcaagggcttgcaaaacaagaaactagactgagtgaacaaaaagttaa |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||||||||| ||||||| |
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| T |
38864252 |
ttaagggtatggacaccgacaacagtggaaccattacaattgaagagctcaagtaagggcttgtaaaacaaggaactagactgagtgaacaacaagttaa |
38864351 |
T |
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| Q |
294 |
gcaattaatggaagctgtaagttatct |
320 |
Q |
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| T |
38864352 |
gcaattaatggaagctgtaagttatct |
38864378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 194 - 320
Target Start/End: Complemental strand, 38809124 - 38808998
Alignment:
| Q |
194 |
ttaagggtatggacaccgacaacagtggaaccattacaattgaagaactcaagcaagggcttgcaaaacaagaaactagactgagtgaacaaaaagttaa |
293 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| | ||||||| |
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| T |
38809124 |
ttaagggtatggacactgacaatagtggaaccattacaattgaagagctcaagcaagggcttgcaaaacaaggaactagactgagtgaaacagaagttaa |
38809025 |
T |
|
| Q |
294 |
gcaattaatggaagctgtaagttatct |
320 |
Q |
| |
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| T |
38809024 |
gcaattaatggaagctgtaagttatct |
38808998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 38598701 - 38598882
Alignment:
| Q |
11 |
acactcattcaacccctttcaatctagcaa---ggagtattatttcacttttcagttttttaatttaatgacaattggcaaaagaaaagtatag------ |
101 |
Q |
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| T |
38598701 |
acactcattcaacccctttcaatctaacaatatggagtattatttcacttttcagttctttaat-----gacaattggcaaaagaaaagtatagcactat |
38598795 |
T |
|
| Q |
102 |
--agtcactcaattcattcaattattatgaagaagttctgagtaagtatatgcactgcttaaattcaattattatgtttataaactaatt |
189 |
Q |
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| T |
38598796 |
tgagtcactcaattcattcaattgtta---agaagttctgaggaagtatatgcactgcttgaattcaatttttatgtttacaaactaatt |
38598882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 38863852 - 38863910
Alignment:
| Q |
131 |
gaagttctgagtaagtatatgcactgcttaaattcaattattatgtttataaactaatt |
189 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||| |
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| T |
38863852 |
gaagttctgagtaagtatatgcactgcttgaattcaaatattatgtttacaaattaatt |
38863910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 38867753 - 38867841
Alignment:
| Q |
11 |
acactcattcaacccctttcaatctagcaa---ggagtattatttcacttttcagttttttaatttaatgacaattggcaaaagaaaagtatag |
101 |
Q |
| |
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||||||||||||||||||||||||||| || ||||||| |||| ||||||||||||||||||| |||||||||||||| |||| |||| |
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| T |
38867753 |
acactcattcaacccctttcaatctagaaatatggagtatcattttacttttcagttttttaatt-----acaattggcaaaaggaaagaatag |
38867841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 38809529 - 38809471
Alignment:
| Q |
131 |
gaagttctgagtaagtatatgcactgcttaaattcaattattatgtttataaactaatt |
189 |
Q |
| |
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| T |
38809529 |
gaagttctgagtaagtatatacactgcttgaattcaaatattatgtttacaaattaatt |
38809471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 196 - 316
Target Start/End: Complemental strand, 73678 - 73558
Alignment:
| Q |
196 |
aagggtatggacaccgacaacagtggaaccattacaattgaagaactcaagcaagggcttgcaaaacaagaaactagactgagtgaacaaaaagttaagc |
295 |
Q |
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||||| |||||||| ||||||||||||||||||||| ||||||||||||| ||||| |||||||| || | || | || |||||| ||||||||| |
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| T |
73678 |
aaggggatggacactgacaacagtggaaccattacagttgaagaactcaaacaaggacttgcaaagcagggcaccaagctttcagaacaagaagttaagc |
73579 |
T |
|
| Q |
296 |
aattaatggaagctgtaagtt |
316 |
Q |
| |
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|||||||||| |||||||||| |
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| T |
73578 |
aattaatggacgctgtaagtt |
73558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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